Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28320 430 / 4e-148 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT2G20680 422 / 5e-145 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT5G66460 350 / 6e-117 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT5G01930 343 / 9e-114 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT3G10890 339 / 7e-113 Glycosyl hydrolase superfamily protein (.1) AT3G10900 316 / 9e-104 Glycosyl hydrolase superfamily protein (.1) AT1G02310 310 / 2e-101 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT3G30540 229 / 2e-71 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G130400 [exp] 433 / 2e-149 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 365 / 9e-126 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 366 / 4e-123 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.007G022000 [exp] 366 / 5e-123 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 362 / 2e-121 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 357 / 6e-119 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 352 / 2e-116 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 338 / 2e-112 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 212 / 3e-64 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027329 [exp] 601 / 0 AT2G20680 438 / 8e-152 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039032 [exp] 599 / 0 AT2G20680 433 / 8e-150 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 432 / 6e-149 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 423 / 2e-145 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 423 / 2e-145 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10018598 [exp] 421 / 2e-144 AT2G20680 627 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 369 / 3e-124 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 369 / 6e-124 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10030347 [exp] 356 / 1e-118 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 361 / 9e-118 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00150 [poplar] [flax] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Potri.006G009400.1 pacid=42768554 polypeptide=Potri.006G009400.1.p locus=Potri.006G009400 ID=Potri.006G009400.1.v4.1 annot-version=v4.1 ATGCCAGATAAGATGTTCACCTTTAGCGACGAATATCGGTGGCTTGTATCCTTAATAATAGGTGAACAGACAACATATTTCTGTGTCTTGACTTTCTGCT CCAGAAACCAAGAAATGGACTCACAATGGAGAGCCAAAAGACTATTTCCATTCCTAGGAATACTCTTGCTGCTCTCTCTTCTTTACCTTGACTTCAACAA CAGTAACAGCAGCTACTTCAGTTTTCCAATCTTTTTATGGCAACCCAAGATGGGATTTGTCTCAACCAACTCCACACAATTCATCATCATCGATGATGGA GGTGGTGGTAGGGTGTCTGCATTTTATGTTAATGGGTGGAATTCATATTGGTTGATGATGAAGAGTGTGTGGAGTCCATCAAGATCAAAGGTTTCTGAGA TGCTTAAGAGAGGAGCTCAAATGGGGTTGACTGTTTGCCGGACTTGGGCTTTCAGTGATGGTCGTGGTCCTGATGCTTTGCAGGTCTCTCCAGGTCTCTT CAATGAGAGGGTCTTCAGGGGATTAGATTATGTGATAGTTGAAGCAAGGAGGAATCATATAAGGTTAATTCTCAGTCTGGTGAATAATCTTGCTGCATTT GGTGGAAAAAATCAGTATGTAAAGTGGGCAAAAGAAGCTGGAGTTAATGTCTCTTTATCAGATGACTCATTCTTTTCAAACCCAGTTATTAAAGATTACT ACAAGGCTTACATTAAGGCAGTTGTGAAGAGAAAGAATTCATTAAGTGGAGTTAGGTACTCGGAGGAACCGGCAATTTTTGCTTGGGAGCTCATGAATGA GCCTAGGTGTGCTTCCAGTTCTTCTGCTCCTGTTCTTCAGGCATGGATCGCTGAGATGGCCGCATATATCAAAAGCTTGGACAAAAGACATCTAGTGACT GTCGGGCTTGAGGGGTTTTATGGCCTGAATACAACTAACAAGTCAGAAGTGAATCCTGGGATTTGGGCAGCATCACTTGGAACAGACTTCATACTGAATT CAGCAATAGACAACATCGACTTTGCTTCTGTTCATGCATACCCAGATAGCTGGATTCCACATGCTGATTTGGAAGCAAAAACTACTTATCTTTCTAATTG GGTGGATTCTCATATAAGTGATGGAGACTTTGTGCTGAGGAAACCAGTTCTTTTCACAGAAGTCGGCTCAAGATGGGATGTGGATGGGAAAGGAGTGCAT GAGAGAGATGTTTTGCTGAAAATAGTGTACGATAAAATTTATGAATCCGCAAAGAAGAGGCAGGCTGGTGCTGGTGCCTTGATCTGGCAGTTGTTAGTTG AAGATGTGGATGGATACAGTGATCAGTTTTCTTTCGTACCACAGTATTCTCCTTCTACCTATAAACTGATAGAAGAACAGTCATGTAGGCTTCAAAGAAT TTCTGCAGGACACAACAGAGCAAGAAAGCCTGAATGA
AA sequence Show only first row Show all	>Potri.006G009400.1 pacid=42768554 polypeptide=Potri.006G009400.1.p locus=Potri.006G009400 ID=Potri.006G009400.1.v4.1 annot-version=v4.1 MPDKMFTFSDEYRWLVSLIIGEQTTYFCVLTFCSRNQEMDSQWRAKRLFPFLGILLLLSLLYLDFNNSNSSYFSFPIFLWQPKMGFVSTNSTQFIIIDDG GGGRVSAFYVNGWNSYWLMMKSVWSPSRSKVSEMLKRGAQMGLTVCRTWAFSDGRGPDALQVSPGLFNERVFRGLDYVIVEARRNHIRLILSLVNNLAAF GGKNQYVKWAKEAGVNVSLSDDSFFSNPVIKDYYKAYIKAVVKRKNSLSGVRYSEEPAIFAWELMNEPRCASSSSAPVLQAWIAEMAAYIKSLDKRHLVT VGLEGFYGLNTTNKSEVNPGIWAASLGTDFILNSAIDNIDFASVHAYPDSWIPHADLEAKTTYLSNWVDSHISDGDFVLRKPVLFTEVGSRWDVDGKGVH ERDVLLKIVYDKIYESAKKRQAGAGALIWQLLVEDVDGYSDQFSFVPQYSPSTYKLIEEQSCRLQRISAGHNRARKPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Potri.006G009400 [exp]	0	1
AT5G13460		IQD11	IQ-domain 11 (.1)		Potri.001G021000 [exp]	2.23	0.8178
AT5G49690			UDP-Glycosyltransferase superf...		Potri.010G182575 [exp]	3.60	0.7895
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.009G149700 [exp]	6.85	0.8503	ATCSLA02.1
AT5G45280			Pectinacetylesterase family pr...		Potri.003G046200 [exp]	7.34	0.8147
AT3G18490			Eukaryotic aspartyl protease f...		Potri.015G051800 [exp]	8.00	0.8195
AT2G26870		NPC2	non-specific phospholipase C2 ...		Potri.001G275500 [exp]	9.00	0.8089
AT1G65295			unknown protein		Potri.019G053100 [exp]	9.89	0.8145
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.009G086700 [exp]	11.83	0.7578
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Potri.002G195800 [exp]	12.36	0.7776
AT2G04280			unknown protein		Potri.014G170200 [exp]	13.85	0.8121

Compare expression of checked genes

Potri.006G009400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.