Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51970 244 / 4e-78 ATASAT1, ASAT1, ATSAT1 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) AT5G55380 238 / 1e-75 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55350 231 / 3e-73 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55340 227 / 1e-71 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55360 209 / 1e-64 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55370 209 / 1e-64 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34500 204 / 7e-63 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34520 199 / 9e-61 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55330 198 / 3e-60 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34490 192 / 6e-58 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G014700 [exp] 514 / 0 AT5G55340 242 / 1e-77 MBOAT (membrane bound O-acyl transferase) family protein (.1) Potri.001G106800 [exp] 344 / 5e-117 AT3G51970 255 / 1e-82 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.016G014600 [exp] 307 / 3e-102 AT3G51970 299 / 1e-99 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.009G055100 [exp] 301 / 4e-100 AT3G51970 330 / 8e-112 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.009G055000 [exp] 298 / 3e-99 AT3G51970 314 / 7e-106 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.009G054900 [exp] 275 / 6e-90 AT3G51970 280 / 1e-92 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.001G260700 [exp] 273 / 4e-89 AT3G51970 268 / 2e-87 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.008G145700 [exp] 233 / 1e-73 AT5G55340 264 / 1e-86 MBOAT (membrane bound O-acyl transferase) family protein (.1) Potri.006G009600 [exp] 94 / 1e-21 AT5G55360 145 / 3e-41 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039576 [exp] 261 / 2e-84 AT3G51970 329 / 7e-112 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Lus10022293 [exp] 164 / 4e-49 AT5G55340 178 / 2e-55 MBOAT (membrane bound O-acyl transferase) family protein (.1) Lus10003655 [exp] 136 / 9e-39 AT5G55380 126 / 5e-36 MBOAT (membrane bound O-acyl transferase) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0517 [poplar] [flax] MBOAT-like PF13813 [poplar] [flax] MBOAT_2 Membrane bound O-acyl transferase family
Representative CDS sequence Show only first row Show all	>Potri.006G009800.1 pacid=42770689 polypeptide=Potri.006G009800.1.p locus=Potri.006G009800 ID=Potri.006G009800.1.v4.1 annot-version=v4.1 ATGGGAGGTGGCTTGCCCAACTTCCTCTTGGTATGGATACTAGTCTTGGCACTACTTTGCTATTGTCACAAAATAGGTAAGTTGATCGACAAAGGAACAA CTAGGCTCTTTGCTATCCTCCCAGTCATATGCATATTTCTTGTCCTTCCTCTCTATATCTCTGTCTTCAATCTTAGAGCTCTTTCTTCTTTCTTCCTCTC TTGGCTTGCAAACTTCAAGCTTCTTCTCTTTGCCTTAGACCAAGGCCCTTTATCACCCCAACCAGTACCCCTCTCTTTGCCACATTTTATTGCCTTAGCT TGCCTTCCCATCAAGATTCAACAAAACCCTCCACCAAATTTATCACCTCATAGTCAAGAGCTTGTAAATGTTAATGATAATCAAGATCTTGAGAAGCTTG TAAATGTTGAAGACAATGATACCCCATCTCAAGAAGTCCCCAGAAAAGGCCTTAGTACACCTCTAAAATATTTCATAAAGTTTCTACTACTGGTCTTATT TGGTTACATGTACACCAAAGAAGAATATATCCATTCAAAAATCATATTTCTAGTCTATGTTATCCACATTTATATTGGTCTAGAATTTATCTTAGCCATG GTTGGAGCCGTAGCTCGAGCCTTCCTTGGTATAGAACTCGAGCCACAATTTGATGAGCCATACCTAGCTAGCTCATTGCAAGACTTTTGGGGCAAAAGAT GGAACCTGATGGTGACTAGTGTCCTACACCCTGCGGTATTCAATCCTGTCAGGTCCCTTTTTAGCCGTTTTATGACAAAAAAATGGACGCTATTACCAGC TGCGATTGCATCATTTTTGGTTTCCGGCATCATGCACGAGCTGATTTTCTATCACATTGGACGCCGAAAGCCAACTTGGGAGGTCACGTGCTTCTTTCTC TTGCATGGTGTTTGCTTGACTATTGAAATTGTTATCAAGAGGGAATTAAACTGTTCGTGGGGATTGCCTAGGGTGGTGGCAGCACCACTTGTGGTGGGGT TTGTGGTGGCTACTGCCGTGTGGTTGTTCATGCCGACAGTGGTACGTTGCAAGATTGATGTTGAGGCAAGAATGGAAATAATTGCTTTCATTAATTTTGT GAAAGGTGTATACATCTACTTGAAAAATGTATTGTGA
AA sequence Show only first row Show all	>Potri.006G009800.1 pacid=42770689 polypeptide=Potri.006G009800.1.p locus=Potri.006G009800 ID=Potri.006G009800.1.v4.1 annot-version=v4.1 MGGGLPNFLLVWILVLALLCYCHKIGKLIDKGTTRLFAILPVICIFLVLPLYISVFNLRALSSFFLSWLANFKLLLFALDQGPLSPQPVPLSLPHFIALA CLPIKIQQNPPPNLSPHSQELVNVNDNQDLEKLVNVEDNDTPSQEVPRKGLSTPLKYFIKFLLLVLFGYMYTKEEYIHSKIIFLVYVIHIYIGLEFILAM VGAVARAFLGIELEPQFDEPYLASSLQDFWGKRWNLMVTSVLHPAVFNPVRSLFSRFMTKKWTLLPAAIASFLVSGIMHELIFYHIGRRKPTWEVTCFFL LHGVCLTIEIVIKRELNCSWGLPRVVAAPLVVGFVVATAVWLFMPTVVRCKIDVEARMEIIAFINFVKGVYIYLKNVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.006G009800 [exp]	0	1
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152301 [exp]	4.69	0.9503
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111600 [exp]	5.91	0.9444
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125151 [exp]	6.00	0.9489
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221300 [exp]	6.00	0.9272
AT5G47610			RING/U-box superfamily protein...		Potri.011G147900 [exp]	6.55	0.8883
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Potri.011G025300 [exp]	6.63	0.9455
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051200 [exp]	6.92	0.9433
					Potri.012G012100 [exp]	9.48	0.9308
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125100 [exp]	10.19	0.9269
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Potri.019G103500 [exp]	12.84	0.9299	DFL2.1,GH3-11

Compare expression of checked genes

Potri.006G009800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.