Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22350 734 / 0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) AT4G22285 732 / 0 Ubiquitin C-terminal hydrolases superfamily protein (.1) AT4G22410 553 / 0 Ubiquitin C-terminal hydrolases superfamily protein (.1) AT5G22030 63 / 4e-10 UBP8 ubiquitin-specific protease 8 (.1.2) AT2G40930 60 / 4e-09 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT1G32850 59 / 5e-09 UBP11 ubiquitin-specific protease 11 (.1) AT5G57990 58 / 2e-08 UBP23 ubiquitin-specific protease 23 (.1) AT5G10790 56 / 6e-08 UBP22 ubiquitin-specific protease 22 (.1) AT4G10570 56 / 1e-07 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 55 / 1e-07 UBP10 ubiquitin-specific protease 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G014000 [exp] 966 / 0 AT4G22350 699 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Potri.006G266100 [exp] 74 / 9e-14 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1) Potri.018G017000 [exp] 71 / 1e-12 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.016G031900 [exp] 66 / 3e-11 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.011G112800 [exp] 66 / 4e-11 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.006G033800 [exp] 64 / 2e-10 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G214800 [exp] 63 / 4e-10 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G201100 [exp] 62 / 7e-10 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.001G449000 [exp] 56 / 4e-08 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003795 [exp] 815 / 0 AT4G22285 713 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10010490 [exp] 801 / 0 AT4G22350 714 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Lus10027746 [exp] 340 / 5e-114 AT4G22285 321 / 9e-107 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10027745 [exp] 188 / 4e-56 AT4G22285 150 / 2e-42 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10035547 [exp] 170 / 4e-50 AT4G22285 154 / 9e-45 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10035548 [exp] 115 / 8e-30 AT4G22410 102 / 3e-26 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10008452 [exp] 71 / 2e-12 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013369 [exp] 71 / 2e-12 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10032623 [exp] 67 / 3e-11 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10027289 [exp] 65 / 1e-10 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF02148 [poplar] [flax] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G010100.1 pacid=42770036 polypeptide=Potri.006G010100.1.p locus=Potri.006G010100 ID=Potri.006G010100.1.v4.1 annot-version=v4.1 ATGAAAAACAAGAGGGAAGAAGATGATATGGGGAGTGAAGTAAGTGGTAGTGTTTTAAAGAGGCAGAGAGTGGATGAACAGTCTTCAGCTTCTGGTATTG GAAACCCACTTGTGCCTTACAATGATGTGGATGATGAAGACGAGGACTTTGAAAGGGGGAAAACAAATAATGGTGGTGGGGTGGAGGAGAGTAATACACA AGTTGTTGCGGCGGAGAATGGTGAGGATGAGGAGGAGGAAGAGGATGTGTATGGACAAGGGGATAGTTTGGAAAGGAGGAAGAGTCAATTTGAGCCTCGT GAAGATTGCCCGTATTTGGATACTGTTAATCGACAGGTGTTGGATTTTGATTTTGAGAAATTTTGCTCTGTTTCTCTGTCGAATTTGAATGTGTATGCAT GCTTAGTTTGTGGGAAGTATTACCAAGGAAGAGGGAAGAAATCCCATGCTTATACTCATAGTCTTGAAGCAGGACACCATGTGTACATCAATCTTAGGAC AGAGAAGGTTTATTGTCTTCCTGATGGATATGAGATTATTGACCCATCACTTGATGACATACGACATGTTCTCAATCCAAGATTTACCAGGGATCAAGTT GGACAGATTGACAAAAACAGGCAATGGTCCAGGGCACTTGATGGGTCTGATTACCTTCCTGGAATGGTTGGCCTGAATAACATCAAGGAAACTGATTTTG TGAATGTAACAATTCAGTCTCTAATGAGAGTTACACCCTTAAGGAATTTCTTCCTTATCCCTGAAAACTATCAGCATTGTAAGTCTCCTCTTGTTCAACG CTTTGGAGAACTCATGCGTAAAATATGGCATGCTCGGAACTTTAAAGGACAGGTGAGTCCACATGAATTTCTCCAGGCAGTTATGAAAGTTAGTAAGAAA CGTTTTCGAATAGGACAACAGTCTGATCCTGTGGAGTTCATGGCATGGCTTCTTAATACCCTGCATGCAAATCTTAGAACTTCAAAGAAAAATAACAGTA TCATTTATGAGTGCTTTCAGGGTGAGTTGGAGGTTATTAAAGAGAGTCCTAACAAAGCTATCACTGAGAAGAAACAAAATGCTGATGATCAAAGTTCTGA TCAAAGAATTACTGATGGTGTAACTAAACATGATATTTTCACGGAAACTTCTAGAATGCAATTCTTAATGCTTGGACTGGATTTGCCACCACCTCCTCTG TTTAAAGATGTAATGGAGAAGAATATAATACCTCAGGTTCCTCTGTTCAATATACTGAAGAAATTTGATGGTGATACTGTGACTGAAGTTGTTCGTCCTC GTGTTGCCCGGATGAAATATCGTGTCACCAGATTGCCACGATATTTAATACTACATATGCAGCGATTTAAAAAGAACAACTTTTTCATCGAGAAGAATCC CACCTTAGTCAACTTTCCTGTGAAGAACTTGGAATTAAAAGATTTTATTCCTTTGCCAATGCCTAAAGAAAATGAGAGATTGCGCTCGAAGTATGATTTG ATTGCGAACATTGTCCATGATGGAAAGCCTAATGAGGGGTTCTACAGGGTTTTTGTGCAGCGGAAGTCAGAAGAGCTATGGTATGAGATGCAGGATCTGC ATGTTTCTGAAACCCTTCCTCAGATGGTTGCGCTCTCTGAGGCATATGTGCAGATATATGAGCAGCAGCAGTAG
AA sequence Show only first row Show all	>Potri.006G010100.1 pacid=42770036 polypeptide=Potri.006G010100.1.p locus=Potri.006G010100 ID=Potri.006G010100.1.v4.1 annot-version=v4.1 MKNKREEDDMGSEVSGSVLKRQRVDEQSSASGIGNPLVPYNDVDDEDEDFERGKTNNGGGVEESNTQVVAAENGEDEEEEEDVYGQGDSLERRKSQFEPR EDCPYLDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEIIDPSLDDIRHVLNPRFTRDQV GQIDKNRQWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYQHCKSPLVQRFGELMRKIWHARNFKGQVSPHEFLQAVMKVSKK RFRIGQQSDPVEFMAWLLNTLHANLRTSKKNNSIIYECFQGELEVIKESPNKAITEKKQNADDQSSDQRITDGVTKHDIFTETSRMQFLMLGLDLPPPPL FKDVMEKNIIPQVPLFNILKKFDGDTVTEVVRPRVARMKYRVTRLPRYLILHMQRFKKNNFFIEKNPTLVNFPVKNLELKDFIPLPMPKENERLRSKYDL IANIVHDGKPNEGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSEAYVQIYEQQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22350			Ubiquitin C-terminal hydrolase...		Potri.006G010100 [exp]	0	1
AT5G64270			splicing factor, putative (.1)		Potri.001G310900 [exp]	2.44	0.7676
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Potri.013G048700 [exp]	7.14	0.7588
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.004G108000 [exp]	10.95	0.7426
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.004G171600 [exp]	11.57	0.7591
AT5G58740			HSP20-like chaperones superfam...		Potri.009G046000 [exp]	41.42	0.6588
AT5G27330			Prefoldin chaperone subunit fa...		Potri.005G040500 [exp]	51.01	0.6895
AT1G09320			agenet domain-containing prote...		Potri.013G006900 [exp]	59.69	0.6630
AT4G22350			Ubiquitin C-terminal hydrolase...		Potri.016G014000 [exp]	60.85	0.6318
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.007G016900 [exp]	74.18	0.6593
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131200 [exp]	92.70	0.6651

Compare expression of checked genes

Potri.006G010100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.