Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 246 / 1e-77 HXXXD-type acyl-transferase family protein (.1) AT1G24430 223 / 2e-68 HXXXD-type acyl-transferase family protein (.1) AT3G30280 203 / 5e-61 HXXXD-type acyl-transferase family protein (.1) AT4G15390 200 / 8e-60 HXXXD-type acyl-transferase family protein (.1) AT1G24420 182 / 4e-53 HXXXD-type acyl-transferase family protein (.1) AT5G47950 178 / 1e-51 HXXXD-type acyl-transferase family protein (.1) AT5G47980 176 / 2e-50 HXXXD-type acyl-transferase family protein (.1) AT5G23970 172 / 1e-49 HXXXD-type acyl-transferase family protein (.1) AT4G15400 163 / 9e-46 HXXXD-type acyl-transferase family protein (.1) AT2G19070 112 / 2e-27 SHT spermidine hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010300 [exp] 764 / 0 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1) Potri.017G010600 [exp] 402 / 1e-138 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Potri.007G139400 [exp] 350 / 7e-119 AT3G26040 252 / 7e-80 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 249 / 1e-78 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 248 / 3e-78 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 247 / 4e-78 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 236 / 8e-74 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.010G056300 [exp] 229 / 4e-71 AT3G26040 347 / 4e-116 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 229 / 6e-71 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035932 [exp] 285 / 2e-92 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 276 / 9e-89 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 213 / 9e-65 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 211 / 5e-64 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 206 / 4e-60 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 180 / 4e-52 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 179 / 9e-52 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 179 / 1e-51 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10026237 [exp] 164 / 1e-45 AT3G26040 214 / 6e-64 HXXXD-type acyl-transferase family protein (.1) Lus10014695 [exp] 162 / 4e-45 AT3G26040 221 / 2e-66 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.006G010200.1 pacid=42770235 polypeptide=Potri.006G010200.1.p locus=Potri.006G010200 ID=Potri.006G010200.1.v4.1 annot-version=v4.1 ATGGTTTTCTTTTACTCGCCGGCCAGTGAAGATCTCTGCAAGAACTCTGATCATCTGAAAGATTCTTTCTCAAAAACATTAACTCACTTCTACCCTTTTG CTGGACGAATAAAGGATGACTTTTCAGTTGACTGCAATGATGATGGCGCTGAGTTCATTGAAGCTCGAGTAGCTGGTGACATATCCATGGTACTTGAGCA AGCAGACATAAATCAGCAGCAACAGCTACTACCATGTAGCCCATATGTAAAGTCATCTAAGCTAAGCACTGATCAGGTAACGCTGGCAGTTCAAGTCAAT TACTTCAATTGTGGTGGGGTGGCAATTAGTATCTGCATTTGGCATGCAGTTGCCGATGCGTCAACTCTAGCAACCTTTGTTAATTGCTGGGCTGCAATTT CTCGTGATCCCAATAACGTTATCGACGAGGTGGTTTTCGACTGCACGACACTCTTTCCTCCACAAGATTTATCAGGCTTCTCTTTGCACAGCTTCGTAAA AGAGGATGTGTCAAGTGAAATCGTGATGAAAAGGTTCTTGTTTGATGGTTCCAAGGTAGCTGCTCTAAGAGATGAAGTAGGCAATGGACCATCTTTGGAT CGTCCGACTCGTTTCATAGCTGTTTCAGCTCTTATTTTGGGGGCCATGATGGCCGTAACCAGAGAAAATAATGCTATGCAGATAAATGCTGCGTTCATTG TTGTCGATCTGCGGAGGAGACTGAAACCACCAGTGCCAAAACAATCAATTGGAAACACTTCCCAATTGACAATAGCAAATTGGCCAGAGAGTGAAAGTAA TGTGTTGAGCTATAATGGTTTAGCAGGAAAACTTCATGAGTCAATAAGGATGATGAATGATGACTATATCAGGAAGTTTCATGCTGGTGGTGGGTACTTT AACTTGCTCAAAAGAGCTGGGGAAGAAGCTAGAAAGGGTTCGAATTTGACGTTGTTCGGTTTCAGTAGTTGGTGCAACTTTCCATTTTATGAAACTGATT TTGGGTGGGGCAAACCTCTTTGGGTAAGTCCTGCCTTGAAGTTTAACAGGGTTGCCGTTTTCTTAGATACAAAAGACGGCGAGGGAATAGAAGCATGGAT TGGACTGTCCAAGGAAGACATGGTAAAGTTCGAACAAGACCCTGGAATCCTTACCTATGCTTCTTTCAGTGCAAGCATATAA
AA sequence Show only first row Show all	>Potri.006G010200.1 pacid=42770235 polypeptide=Potri.006G010200.1.p locus=Potri.006G010200 ID=Potri.006G010200.1.v4.1 annot-version=v4.1 MVFFYSPASEDLCKNSDHLKDSFSKTLTHFYPFAGRIKDDFSVDCNDDGAEFIEARVAGDISMVLEQADINQQQQLLPCSPYVKSSKLSTDQVTLAVQVN YFNCGGVAISICIWHAVADASTLATFVNCWAAISRDPNNVIDEVVFDCTTLFPPQDLSGFSLHSFVKEDVSSEIVMKRFLFDGSKVAALRDEVGNGPSLD RPTRFIAVSALILGAMMAVTRENNAMQINAAFIVVDLRRRLKPPVPKQSIGNTSQLTIANWPESESNVLSYNGLAGKLHESIRMMNDDYIRKFHAGGGYF NLLKRAGEEARKGSNLTLFGFSSWCNFPFYETDFGWGKPLWVSPALKFNRVAVFLDTKDGEGIEAWIGLSKEDMVKFEQDPGILTYASFSASI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.006G010200 [exp]	0	1
AT3G06880			Transducin/WD40 repeat-like su...		Potri.008G220800 [exp]	4.47	0.7755
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.006G010300 [exp]	9.05	0.7934
AT1G11925			Stigma-specific Stig1 family p...		Potri.011G009100 [exp]	27.76	0.7476
AT1G62500			Bifunctional inhibitor/lipid-t...		Potri.008G135860 [exp]	32.03	0.6562
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037300 [exp]	34.11	0.7057
					Potri.014G097450 [exp]	40.62	0.7085
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447832 [exp]	41.46	0.7066
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.015G107600 [exp]	42.05	0.6896
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037500 [exp]	52.09	0.6674
AT3G25640			Protein of unknown function, D...		Potri.010G131600 [exp]	52.15	0.6389

Compare expression of checked genes

Potri.006G010200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.