Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GDI1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07880 317 / 4e-110 SCN1 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) AT1G12070 286 / 4e-98 Immunoglobulin E-set superfamily protein (.1) AT1G62450 277 / 1e-94 Immunoglobulin E-set superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G013700 [exp] 460 / 2e-166 AT3G07880 314 / 5e-109 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G223200 [exp] 330 / 4e-115 AT3G07880 328 / 2e-114 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.014G163000 [exp] 318 / 2e-110 AT3G07880 329 / 7e-115 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G234600 [exp] 261 / 4e-88 AT3G07880 212 / 5e-69 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G259200 [exp] 193 / 1e-61 AT3G07880 184 / 4e-58 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027327 [exp] 327 / 2e-114 AT3G07880 303 / 2e-105 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10003794 [exp] 325 / 1e-113 AT3G07880 306 / 2e-106 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10039029 [exp] 325 / 2e-113 AT3G07880 300 / 5e-104 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10001732 [exp] 311 / 7e-108 AT3G07880 310 / 6e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10002272 [exp] 305 / 2e-105 AT3G07880 309 / 1e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10006400 [exp] 303 / 2e-104 AT3G07880 313 / 1e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10012352 [exp] 298 / 1e-102 AT3G07880 308 / 6e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10010491 [exp] 292 / 2e-99 AT3G07880 274 / 9e-93 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10003616 [exp] 40 / 0.0002 ND 38 / 7e-04
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF02115 [poplar] [flax] Rho_GDI RHO protein GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Potri.006G010500.1 pacid=42768569 polypeptide=Potri.006G010500.1.p locus=Potri.006G010500 ID=Potri.006G010500.1.v4.1 annot-version=v4.1 ATGTCTTTGGAGGTTGGTGTGGATTCAAATACTAAAAGCATGGGTTTTGATGAGAAAAACAAAGATGAAGTTTCAGAGACAAAAGCAACAACGAAAACAC CTCCAAATGAAGAACATAATGTTGATGAACCTAAAAGTGGTGGGATTAGTAGAAAGATGAGTGAGAGTTCTCTTTATGCAACTGATCAAGAAGAAGAGGA TGATGATGAATCTCATGAAAGGAAGATTGAGCTTGGTCCTCAATACACACTCAAAGAACAACTTGAGAAAGATAAGGATGATGAAAGCTTGAGGAGGTGG AAGGAACAGCTTCTTGGGGCTGTGGATATTGAGGCTGTTGGAGAGACTCTAGAACCTGAAGTTAAAATCCTGAGCCTCGAAATCAAATCCCCTGGTAGAC CTGATATTGTTCTTTCAGTTCCTGAGAATGGCAAGCCTAAAGGTTCTTGGTTCACCTTAAAAGAAGGTAGCCGCTATAGCCTGCAATTCACTTTTGAGGT TAAGAACAACATTGTTTCCGGCCTCAAATATAGTAACACAGTTTGGAAAACTGGTGTCAAGGTTGATAGCTCGAAGGAGATGATCGGAACCTTTAGTCCT CAGGCAGAACCTTACACTCATGAAATGCCCGAAGAAACTACTCCATCTGGTATTTTTGCTAGAGGATCATATGCTGCTAAAACCAAATTTGTCGATGACG ATAACAAGCGCTACTTGGAGATCAACTACACCTTCGACATCCGTAAAGATTGGCTGCCAACTCAAAACTAA
AA sequence Show only first row Show all	>Potri.006G010500.1 pacid=42768569 polypeptide=Potri.006G010500.1.p locus=Potri.006G010500 ID=Potri.006G010500.1.v4.1 annot-version=v4.1 MSLEVGVDSNTKSMGFDEKNKDEVSETKATTKTPPNEEHNVDEPKSGGISRKMSESSLYATDQEEEDDDESHERKIELGPQYTLKEQLEKDKDDESLRRW KEQLLGAVDIEAVGETLEPEVKILSLEIKSPGRPDIVLSVPENGKPKGSWFTLKEGSRYSLQFTFEVKNNIVSGLKYSNTVWKTGVKVDSSKEMIGTFSP QAEPYTHEMPEETTPSGIFARGSYAAKTKFVDDDNKRYLEINYTFDIRKDWLPTQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.006G010500 [exp]	0	1	Pt-GDI1.1
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.001G065900 [exp]	2.00	0.9074
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Potri.004G218500 [exp]	2.44	0.9142	MLO4.1
AT1G24764		ATMAP70-2	microtubule-associated protein...		Potri.006G039200 [exp]	3.87	0.9101
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.007G091200 [exp]	4.47	0.9016
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.008G038450 [exp]	6.00	0.8993
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.016G013700 [exp]	6.48	0.8991	GDI1.2
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Potri.013G003600 [exp]	9.21	0.8585
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Potri.003G071500 [exp]	10.19	0.8396
AT1G22050		MUB6	membrane-anchored ubiquitin-fo...		Potri.002G091800 [exp]	11.13	0.7957
AT1G73340			Cytochrome P450 superfamily pr...		Potri.017G154600 [exp]	13.52	0.8167

Compare expression of checked genes

Potri.006G010500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.