Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22360 303 / 2e-100 SWIB complex BAF60b domain-containing protein (.1) AT3G19080 157 / 1e-43 SWIB complex BAF60b domain-containing protein (.1) AT1G49520 132 / 9e-35 SWIB complex BAF60b domain-containing protein (.1) AT2G14880 81 / 4e-18 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 74 / 3e-16 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 73 / 3e-15 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 70 / 2e-14 SWIB/MDM2 domain superfamily protein (.1) AT1G31760 63 / 4e-12 SWIB/MDM2 domain superfamily protein (.1) AT3G48600 56 / 8e-09 SWIB complex BAF60b domain-containing protein (.1.2) AT4G26810 49 / 2e-07 SWIB/MDM2 domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G013400 [exp] 523 / 0 AT4G22360 301 / 1e-99 SWIB complex BAF60b domain-containing protein (.1) Potri.005G134500 [exp] 152 / 1e-42 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.009G106700 [exp] 145 / 1e-39 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.004G145200 [exp] 139 / 2e-37 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.001G297400 [exp] 71 / 1e-14 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 71 / 1e-14 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.007G039350 [exp] 69 / 5e-14 AT3G19080 118 / 4e-32 SWIB complex BAF60b domain-containing protein (.1) Potri.013G070600 [exp] 62 / 1e-11 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1) Potri.009G123800 [exp] 50 / 3e-06 AT2G16485 1064 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014892 [exp] 218 / 9e-67 AT4G22360 243 / 2e-76 SWIB complex BAF60b domain-containing protein (.1) Lus10016581 [exp] 169 / 8e-48 AT4G22360 190 / 1e-55 SWIB complex BAF60b domain-containing protein (.1) Lus10019640 [exp] 152 / 3e-42 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10009333 [exp] 150 / 5e-42 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10005667 [exp] 70 / 3e-14 AT3G03590 118 / 4e-35 SWIB/MDM2 domain superfamily protein (.1) Lus10013893 [exp] 67 / 3e-13 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 56 / 5e-10 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10025974 [exp] 48 / 1e-05 AT3G51120 395 / 3e-120 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (.1) Lus10038799 [exp] 45 / 3e-05 AT4G26810 160 / 1e-50 SWIB/MDM2 domain superfamily protein (.1.2) Lus10042072 [exp] 46 / 4e-05 AT2G16485 1007 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [poplar] [flax] SWIB SWIB/MDM2 domain PF08766 [poplar] [flax] DEK_C DEK C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G010700.2 pacid=42769157 polypeptide=Potri.006G010700.2.p locus=Potri.006G010700 ID=Potri.006G010700.2.v4.1 annot-version=v4.1 ATGGTGACGGACCAGGAGATAGCGAAAGGAGTAGAGACGGTGCTGCGGCAAGCAGACCCAAGCGCCGTTACTTCATTAAACGGTGTCGTACAGCAACTTG AAGCTAAATTAGGGTTAGATTTGTCACACAAAGCTGCTTTTATTCGTGACCAAATTGACCTTCTCCTCCGTTCCCACCCTATCACTACCACCGCCAGTGC TACGGCCCCCGCCTCCGTGACCACCACCGGGCATCCGCCACCACAACATCAAGCTTTTCAGTTCCAACAAGGACAAGCTCTTAACTTAACCCCTAAAGAC CATTTTGCCCTCCAATTTCAACAACAATTTCACCCTTCCCATTTTGCCATTCACCCTCACCACCAGCACCAACACCAGCACCATCCTCAACAACACCACC AGCACCAGGTTTTTTCTCAGGACCTTAACTTTAGGCAGCCACAAGCGGTGGTGACTCCCCCAGCTCCACCACCTCAGCTGCAAGCACAGCAGCAGCATAG GCAGACACAGCATGTGCAAAATGCTGGGGTTGTTACTAATGAAGTGGCAAAAGAGAGCAGTGCTCCAGTTGGATCCAAAAGAAGAGGTGGACCTGGTGGG TTAAACAAAGTATGTGGTGTTTCACCTGAACTTCAGGCCATTGTTGGTGAGCCAGCGCTGCCAAGGACTGAGATTGTGAAGCAATTGTGGCAATACATAA GGAAAAACAACCTCCAGGATCCAAGTAACAAGAGGAAGATAATTTGCGATGATGCTTTACGTGTGGTTTTTGAGACAGACTGCACTGACATGTTTAAGAT GAATAAGTTACTGGCTAAACATATCATCCCGCTTCAACCATCAAAGGAATCCAGTCAAGCTAAGCGAGCAAAGGTGGATGTTGAGACCCCAACTGAAAAT ACTGAACCTGGTGCATCACTTGTGGGAATATCTGAAAGACTTGCTGAGTTTCTGGGAACTACTGAGAGGGAAATGACCCAAACAGAAGCATCCAGACGTG TTTGGGAGTACATAAAGCTAAAACAGTTGGAGGATCCGTTAAATTCAATGGCGATACAATGTGATACAAAGCTTCGTGATCTTCTTGGATGTGAAAGCAT ATCTGCAGTGGGGGTAGGAGAGGTGTTAGCACGGCATCATTTATTCAAACGGTCATGA
AA sequence Show only first row Show all	>Potri.006G010700.2 pacid=42769157 polypeptide=Potri.006G010700.2.p locus=Potri.006G010700 ID=Potri.006G010700.2.v4.1 annot-version=v4.1 MVTDQEIAKGVETVLRQADPSAVTSLNGVVQQLEAKLGLDLSHKAAFIRDQIDLLLRSHPITTTASATAPASVTTTGHPPPQHQAFQFQQGQALNLTPKD HFALQFQQQFHPSHFAIHPHHQHQHQHHPQQHHQHQVFSQDLNFRQPQAVVTPPAPPPQLQAQQQHRQTQHVQNAGVVTNEVAKESSAPVGSKRRGGPGG LNKVCGVSPELQAIVGEPALPRTEIVKQLWQYIRKNNLQDPSNKRKIICDDALRVVFETDCTDMFKMNKLLAKHIIPLQPSKESSQAKRAKVDVETPTEN TEPGASLVGISERLAEFLGTTEREMTQTEASRRVWEYIKLKQLEDPLNSMAIQCDTKLRDLLGCESISAVGVGEVLARHHLFKRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22360			SWIB complex BAF60b domain-con...		Potri.006G010700 [exp]	0	1
AT5G09540			Chaperone DnaJ-domain superfam...		Potri.007G114800 [exp]	3.00	0.7985
AT1G64050			unknown protein		Potri.001G098500 [exp]	5.65	0.8019
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	10.14	0.8149	GTE910
AT1G18560			BED zinc finger ;hAT family di...		Potri.012G059200 [exp]	11.13	0.7975
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Potri.011G129500 [exp]	11.61	0.7886
					Potri.013G062200 [exp]	12.00	0.7438
AT2G28940			Protein kinase superfamily pro...		Potri.009G031500 [exp]	12.16	0.6975
AT1G34320			Protein of unknown function (D...		Potri.019G085900 [exp]	12.40	0.7834
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.010G099400 [exp]	12.48	0.7352
AT5G62620			Galactosyltransferase family p...		Potri.010G040400 [exp]	12.68	0.7445

Compare expression of checked genes

Potri.006G010700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.