Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45540 173 / 1e-45 Protein of unknown function (DUF594) (.1) AT5G45480 158 / 2e-40 Protein of unknown function (DUF594) (.1) AT5G45460 151 / 2e-38 unknown protein AT5G45530 149 / 1e-37 Protein of unknown function (DUF594) (.1) AT5G45470 145 / 3e-36 Protein of unknown function (DUF594) (.1) AT4G19090 112 / 1e-25 Protein of unknown function (DUF594) (.1) AT4G19080 82 / 1e-16 Protein of unknown function (DUF594) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G011100 [exp] 660 / 0 AT5G45480 173 / 1e-45 Protein of unknown function (DUF594) (.1) Potri.006G011200 [exp] 654 / 0 AT5G45480 150 / 1e-37 Protein of unknown function (DUF594) (.1) Potri.006G013750 [exp] 572 / 0 AT5G45540 183 / 7e-49 Protein of unknown function (DUF594) (.1) Potri.016G012400 [exp] 553 / 0 AT5G45480 167 / 5e-43 Protein of unknown function (DUF594) (.1) Potri.006G013400 [exp] 407 / 1e-133 AT5G45480 115 / 2e-26 Protein of unknown function (DUF594) (.1) Potri.006G013500 [exp] 405 / 2e-133 AT5G45480 130 / 3e-31 Protein of unknown function (DUF594) (.1) Potri.006G013600 [exp] 378 / 7e-122 AT5G45460 119 / 8e-28 unknown protein Potri.010G154932 [exp] 352 / 2e-116 AT5G45480 166 / 4e-45 Protein of unknown function (DUF594) (.1) Potri.015G059200 [exp] 358 / 2e-114 AT5G45540 200 / 3e-54 Protein of unknown function (DUF594) (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04578 [poplar] [flax] DUF594 Protein of unknown function, DUF594 PF13968 [poplar] [flax] DUF4220 Domain of unknown function (DUF4220)
Representative CDS sequence Show only first row Show all	>Potri.006G010900.1 pacid=42769471 polypeptide=Potri.006G010900.1.p locus=Potri.006G010900 ID=Potri.006G010900.1.v4.1 annot-version=v4.1 ATGGATGTGGATGGTTTATCTGTACGTGTTGTCGCATTGTGGAACGACTGGCAGCTTCGCTCAATGATTTTGCTAAGTCTCTGGCTGCAAATTTTCCTCA CCATCGCTGGCGGTCGACGAAAGTATACAGCCGGAATCTGGCTTGGGACGCTGGTTTGGCTAGCATATACGTCAGCTGACCCGTTGGCAACTCTTTCATT GGGTACAATTACTCGCAATCAAGGGGGTTCCAATTGTAACACTAAAAATGAAAGCATCACCCCGGCATTTTGGTCATCGATGCTCCTTGTCCACCTTGGT GGCCCTTACACCTTTACTGCCTATGCAGTAGAGGACAACGAACTGTGGTCGAGGCATGTGCTTCAGCTATTAACGCAACTTTCGATGTCCTTTTATGCAT CATTGAGGTCATGGTGGAGCATGGATCCGCTCAGATATTTAGCCATTCCTATCTTTATTGCCGGAATCATGAAATATGGGGAGAGGGTTTTGGTTCTTTG GTTAGCAAGCTCCAACAAGTTTAGAGAGTCCGCAAACGAAGAAAGGAAGCTTCTACGAGAGCAATTAGATAACAAAATTCCACGCGATGACTTCGATAAC ATGGATGCAACAAGGTGCGATAAAGTTTTGGGATTTGATCGCATAAGACCAGAGGCAAAACATCTCCATGAAGCTCATTTCTTATTCCGAATTTTGAAGT TACTATATGGAGATTACCTTGTTACATATCCAACTCATATGAGCAGCTATAATATCTTGAAGAGGAAGTCTGCTGCCAAAGCATTCGAGTTGATAGGAGT GGAGTTGGGTTTCATGTTTGATGTCCTTTTCACCAAGGCGATGACTGGGGTTGGCTGGCGGCCTCGCCTCTTTCTCCGCTCCATCAACTTTCTACTCTCT GTCTCCGCATTACTTGCATTCTGGATAATGGCCAGAAACTCCAAAGCCTATTCCGAAATTGATATCACTATATCATACTTGTTGCTAGGAGGAGCTGTTG TTCTTGATATATACTCAGTCATTTGGATGCTTCTCTCTGATTGGACTATGCTTTGGCTTAGCAAGAAAAGGGAGCCATTGGCGGAGTCTATTTGTCAATT TATTTATTCTTCTCGGTGGCTGTCGTCTCTTATTCATAAAAAAAGGTGGAAAGAATCTATGAACCAACATGCCATACATAAGCATATTGAGCAAAGTGTA CCAATGGGAAATCTTATCAGCAAGGGTCACAACTTTCGGAGATGGAAAGAGGATGTGGATTGTTATTTAAAGGAATTGATCTTCGAACGTCTCTTAGATA TGCGTTCAAGATACAGTCGCCAAGATGATCAAAGGATGATATTGGCAGAGAGAGGTGATCATGCACTCAGAAGAAACGGATGCTCTGAAAAATTTCGTTG GTCTGTGGTTGATATAGACTTTCATGAAAGCTTCCTATTATGGCACATTGCCACTTGGTTTTGTCACGTAGGCCATACTGAATCTCCTCATGTTAAAGTA AGCAGATCTTTAGCTAGTTACATGTTGTATCTTCGGAGTGATATGCCGTTTATGCTACCTAAAGAGATGGGTGAAGCAAAGTACATGTCAACCAGCGTAG AAGCCACTTTTCAAGTTGAAGAGGGACAAACCGAAGGGTCAGTGCTATCTGATGGTCGCAACCTCGCCAGTGCATTGGACTTGCTGGAGACAGAGGATGG GTGGTCAGATGAAACAAAATGGGAAATGATATCTCAAGTGTGGGTGGAGATGCTAACTTTTGCTGCGATTCATTGTGGATGGAAAGAGCATGCAAAAGCA CTTAGTCAAGGAGGAGAGCTACTTACCTTTGTGGCCGTTCTTATGTCTCATCTTGGCATTAGTGAGCAGTGTATCTACAAGTAA
AA sequence Show only first row Show all	>Potri.006G010900.1 pacid=42769471 polypeptide=Potri.006G010900.1.p locus=Potri.006G010900 ID=Potri.006G010900.1.v4.1 annot-version=v4.1 MDVDGLSVRVVALWNDWQLRSMILLSLWLQIFLTIAGGRRKYTAGIWLGTLVWLAYTSADPLATLSLGTITRNQGGSNCNTKNESITPAFWSSMLLVHLG GPYTFTAYAVEDNELWSRHVLQLLTQLSMSFYASLRSWWSMDPLRYLAIPIFIAGIMKYGERVLVLWLASSNKFRESANEERKLLREQLDNKIPRDDFDN MDATRCDKVLGFDRIRPEAKHLHEAHFLFRILKLLYGDYLVTYPTHMSSYNILKRKSAAKAFELIGVELGFMFDVLFTKAMTGVGWRPRLFLRSINFLLS VSALLAFWIMARNSKAYSEIDITISYLLLGGAVVLDIYSVIWMLLSDWTMLWLSKKREPLAESICQFIYSSRWLSSLIHKKRWKESMNQHAIHKHIEQSV PMGNLISKGHNFRRWKEDVDCYLKELIFERLLDMRSRYSRQDDQRMILAERGDHALRRNGCSEKFRWSVVDIDFHESFLLWHIATWFCHVGHTESPHVKV SRSLASYMLYLRSDMPFMLPKEMGEAKYMSTSVEATFQVEEGQTEGSVLSDGRNLASALDLLETEDGWSDETKWEMISQVWVEMLTFAAIHCGWKEHAKA LSQGGELLTFVAVLMSHLGISEQCIYK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45540			Protein of unknown function (D...		Potri.006G010900 [exp]	0	1
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.002G227600 [exp]	1.41	0.9592
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Potri.009G148900 [exp]	1.73	0.9344	Pt-PSK6.1
AT3G50150			Plant protein of unknown funct...		Potri.013G146700 [exp]	2.44	0.9424
AT2G20560			DNAJ heat shock family protein...		Potri.007G135800 [exp]	2.64	0.9257
					Potri.001G293200 [exp]	2.82	0.9205
AT3G52500			Eukaryotic aspartyl protease f...		Potri.016G071900 [exp]	5.38	0.8589
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.015G077100 [exp]	6.24	0.9006
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.012G081300 [exp]	8.24	0.9338
AT3G18670			Ankyrin repeat family protein ...		Potri.004G003600 [exp]	9.16	0.9062
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.008G013900 [exp]	10.09	0.9294

Compare expression of checked genes

Potri.006G010900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.