Plant FIBer expression Database

Potri.006G011100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45480 174 / 1e-45 Protein of unknown function (DUF594) (.1)
AT5G45460 164 / 8e-43 unknown protein
AT5G45540 163 / 3e-42 Protein of unknown function (DUF594) (.1)
AT5G45530 154 / 2e-39 Protein of unknown function (DUF594) (.1)
AT5G45470 152 / 1e-38 Protein of unknown function (DUF594) (.1)
AT4G19090 129 / 4e-31 Protein of unknown function (DUF594) (.1)
AT4G19080 58 / 9e-09 Protein of unknown function (DUF594) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G011200
[exp]
795 / 0 AT5G45480 150 / 1e-37 Protein of unknown function (DUF594) (.1)
Potri.006G010900
[exp]
639 / 0 AT5G45540 173 / 1e-45 Protein of unknown function (DUF594) (.1)
Potri.006G013750
[exp]
561 / 0 AT5G45540 183 / 7e-49 Protein of unknown function (DUF594) (.1)
Potri.016G012400
[exp]
513 / 7e-175 AT5G45480 167 / 5e-43 Protein of unknown function (DUF594) (.1)
Potri.006G013500
[exp]
383 / 5e-125 AT5G45480 130 / 3e-31 Protein of unknown function (DUF594) (.1)
Potri.006G013400
[exp]
374 / 6e-121 AT5G45480 115 / 2e-26 Protein of unknown function (DUF594) (.1)
Potri.010G154932
[exp]
357 / 1e-118 AT5G45480 166 / 4e-45 Protein of unknown function (DUF594) (.1)
Potri.006G013600
[exp]
342 / 3e-108 AT5G45460 119 / 8e-28 unknown protein
Potri.006G013300
[exp]
330 / 2e-103 AT5G45480 106 / 2e-23 Protein of unknown function (DUF594) (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04578 DUF594 Protein of unknown function, DUF594
PF13968 DUF4220 Domain of unknown function (DUF4220)
Representative CDS sequence
>Potri.006G011100.1 pacid=42766987 polypeptide=Potri.006G011100.1.p locus=Potri.006G011100 ID=Potri.006G011100.1.v4.1 annot-version=v4.1
ATGAATTGGTATAATTCTTATGAATGTGTTATCGAATTGTGGAACGAATGGGAGCTTCGCGCAATGATTTTGCTAAGTCTCTCGCTGCAAATTTTCCTCA
TTGTCACAGGTCATCAACGAAAGTATACAGCCGGAATCTGGTTCGGGATGTTTGTTTGGCTAGCATATTTGTCAGCAGATTGGTTGGCAACAGTTACATT
GGGTATTCTTGCTAGTAGCCAGGGGGGTTCAGAATCCAAAGGTACAACTTCAAATGCAAGCTTCATCCCGGCATTTTGGGCACCGATGCTCCTTGTACAC
CTTGGTGGTCCTGACACTATAACTTCCTATTCAGTAGAGGACAACGAAATGTGGTCAAGGCACTTGCTACAACTATTAACCCAACTTGCGGTGGCCTTTT
ATGCATCGTTTAGGTCATGGTGGAGCAAGGATCCGCTCATATATGTAGTCATTCCCATCTTTGTTTCTGGAGTTATCAAATATGGAGAGAGGGTTTTGGT
CCTCTGTTTAGCAAGCTCCGACCAGTTTAGGGACTCTGTAAACAAAGAAAGAGTGGCTCTACAAGGGCAAATAGAAAGGTCATTTCCAGACGAATACTTC
GATGGCATGAGCACAGAATATATTGATGACATTTTGGGCTTTAATAGCATAATACCTGAGGCCAAATATCTCCATGAAGCTCACTTGCTGTTCCGAACTT
CGAAGTTAGTATTTGCGGATTACCTTGTTACATTTCGTACTCATACGAACAGCTATCATATGTTGAAAAGAAAGAATGCCGTTGAGGCATTCAAATTGAT
AGAAGTTGAGGTGGGGTTCCTGTTTGATTTACTTTTCACCAAGGTGATGACAACAGTTCGTTGGAGACCACGCATCATTCTCCGCTTCATCAACTTTCTG
TCCCCTGTTTCTGCATTAATAGCATTCTCATCAATGACCAGAAAGTCCCATACCTATTCCAAAATTGATATTATTATATCATACTTATTGCTGTTTGGAG
CTGTTGTTCTAGAGATTTACTCGGCCATTTTGATGTTTTTCTCTGATTGGGCTATGCTTTGGCTTAGCAAGCAAAGGAAGCCACCGGCGGATTCTTTTTA
TCGAGGTATTTGTTCTTCACGGTTGCTATCGTTTTTTAGCAATAACGAAAGGTGGAAAGCATCTATGGCCCAAAATAGGCTAACGGATTATCCAAAGACA
TCAAGCAAACACATCCCAAAACTCTTTAGCACTGGTAACATTCAGAACTGGGAGGTTGTTGTTGATGATTTAAAGGAATTGATCTTTAAACGTCTCTTAG
ATATGCGTTCAAGATGCAATTTCCCAGGTGATAAAAATGACATACTGGAAGAGAGAGGTGAGCATGCACTCAGAAGTAAGAGATGCGATGTAAAATTGCA
ACGGTATCTGGAACAAATAAACTTTCATAATAGCTTGCTAACATGGCACATTGCTGTTAATAATTGTTTCGACCAGGATTCTTCGGATTCAATTCATCGT
AACATGAGCAGATCTTTATCTCGTTACATGATGTATCTATGGAAGGACTTGCCGTTGATGCTACCTAAAGCGTTGGGTGAACCATTGTACAAGCTATCCT
TTCGCGTGCGGGATGATGCTGAGAAGCTCAGCAAATTATTGGACTGGCAGCAGGAAAAGGAGAGTTGGTCAGTTGATGAGAAATGGGAATTGATAAGTGA
AGTGTTGGTAGAGATGCTAACTTATGTTGCGAGTCAATGTAAATGGAAAGAGCATGCTCGAGCACTTAAAGGAGGAGGAGAGCTACTCACTTTGGTGGCC
ATTCTTATGGCTCATCTTGGTCTCCATGGGCAGTGCATCTATAACTAA
AA sequence
>Potri.006G011100.1 pacid=42766987 polypeptide=Potri.006G011100.1.p locus=Potri.006G011100 ID=Potri.006G011100.1.v4.1 annot-version=v4.1
MNWYNSYECVIELWNEWELRAMILLSLSLQIFLIVTGHQRKYTAGIWFGMFVWLAYLSADWLATVTLGILASSQGGSESKGTTSNASFIPAFWAPMLLVH
LGGPDTITSYSVEDNEMWSRHLLQLLTQLAVAFYASFRSWWSKDPLIYVVIPIFVSGVIKYGERVLVLCLASSDQFRDSVNKERVALQGQIERSFPDEYF
DGMSTEYIDDILGFNSIIPEAKYLHEAHLLFRTSKLVFADYLVTFRTHTNSYHMLKRKNAVEAFKLIEVEVGFLFDLLFTKVMTTVRWRPRIILRFINFL
SPVSALIAFSSMTRKSHTYSKIDIIISYLLLFGAVVLEIYSAILMFFSDWAMLWLSKQRKPPADSFYRGICSSRLLSFFSNNERWKASMAQNRLTDYPKT
SSKHIPKLFSTGNIQNWEVVVDDLKELIFKRLLDMRSRCNFPGDKNDILEERGEHALRSKRCDVKLQRYLEQINFHNSLLTWHIAVNNCFDQDSSDSIHR
NMSRSLSRYMMYLWKDLPLMLPKALGEPLYKLSFRVRDDAEKLSKLLDWQQEKESWSVDEKWELISEVLVEMLTYVASQCKWKEHARALKGGGELLTLVA
ILMAHLGLHGQCIYN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45480 Protein of unknown function (D... Potri.006G011100
[exp]
0 1
AT5G42930 alpha/beta-Hydrolases superfam... Potri.005G138800
[exp]
1.73 0.9579
AT1G03670 ankyrin repeat family protein ... Potri.019G101500
[exp]
5.19 0.9506
AT1G60500 DRP4C Dynamin related protein 4C (.1... Potri.013G119900
[exp]
5.47 0.9561
AT5G45480 Protein of unknown function (D... Potri.006G013500
[exp]
8.06 0.9361
AT4G19090 Protein of unknown function (D... Potri.012G018500
[exp]
9.16 0.9473
AT2G44930 Plant protein of unknown funct... Potri.017G019300
[exp]
9.94 0.9400
AT2G18350 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, hom... Potri.005G227900
[exp]
11.48 0.9392
AT3G50180 Plant protein of unknown funct... Potri.016G039800
[exp]
12.24 0.9284
AT5G45540 Protein of unknown function (D... Potri.015G059200
[exp]
13.22 0.9437
AT4G33490 Eukaryotic aspartyl protease f... Potri.007G099301
[exp]
14.14 0.9419

Potri.006G011100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.