Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21060 1005 / 0 Galactosyltransferase family protein (.1.2) AT5G62620 732 / 0 Galactosyltransferase family protein (.1.2) AT1G74800 711 / 0 Galactosyltransferase family protein (.1) AT1G27120 697 / 0 Galactosyltransferase family protein (.1) AT1G26810 335 / 2e-105 GALT1 galactosyltransferase1 (.1) AT3G06440 315 / 1e-98 Galactosyltransferase family protein (.1.2) AT1G53290 81 / 5e-16 Galactosyltransferase family protein (.1) AT3G14960 71 / 4e-13 Galactosyltransferase family protein (.1) AT2G26100 71 / 1e-12 Galactosyltransferase family protein (.1) AT1G77810 56 / 5e-08 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G013300 [exp] 1326 / 0 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.015G067600 [exp] 725 / 0 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 721 / 0 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 707 / 0 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G168500 [exp] 355 / 2e-113 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.008G086900 [exp] 338 / 6e-107 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.010G151600 [exp] 337 / 2e-106 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G392700 [exp] 81 / 2e-16 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.011G111700 [exp] 72 / 2e-13 AT1G53290 462 / 2e-164 Galactosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036154 [exp] 1120 / 0 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10004256 [exp] 723 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 719 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 710 / 0 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036686 [exp] 641 / 0 AT5G62620 743 / 0.0 Galactosyltransferase family protein (.1.2) Lus10012822 [exp] 353 / 8e-113 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10030467 [exp] 350 / 7e-112 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10036756 [exp] 340 / 1e-107 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 337 / 1e-107 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10032650 [exp] 311 / 1e-96 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00337 [poplar] [flax] Gal-bind_lectin Galactoside-binding lectin CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.006G011300.1 pacid=42767724 polypeptide=Potri.006G011300.1.p locus=Potri.006G011300 ID=Potri.006G011300.1.v4.1 annot-version=v4.1 ATGAAGAGGTTAAAGATTGAACCTTCTAGTACTAGGAGGTGCAAGCTGTCGCATATGTTGTTGGCTGTAGGAGCAATATACTTGGTGTTTTTAGCATTCA AGTTTCCACATTTTTTAGAGATTGCATCAATGTTGAGTGTGGATGATAGTTATGCTGGATTGGATTCGTCATCTATGGTAAAAGATGTTGAAGACTCCGA TTTAAGCAAACCATCTTTTAGTTCTGTTTATAAGGATGCTTTCCACCGGAAATTAGAGGATAATCAAAACCAGAATGCTCCGATGATGCCTAGTAAGGAA CCTTTGGAAGATGAAAAGGGAGGTTCTAAAACTATAAAGCCACTTCAATATCGTTATGGAAGAATAACAGGAGAAATTATGAGGCGAAGGAATGCAACTA TGAAATTATCACCACTTGAGAGGATGGCAGATGAAGCATGGCTGCTTGGGTTGAAGGCATGGGAAGAAGTGGAAAAGTATGATGGAGAGGAGATTGGACA GAGTTTGTTATATGAGGGGAAGATTGAGTCTTGTCCTTTGTGGGTATCCATGAGTGGAGAGGAGTTGGCTGGAGGGGATAAGATGATGTTTCTACCATGT GGTTTATCTGCTGGGTCTTCTATAACCATTGTGGGAACACCCCATCATGCACACCAGGAGTATGTACCCCAGCTTGCAAGGTTGAGGAATGGTAATGGTA TTGTTATGGTTTCACAGTTCATGATTGAGCTGCAGGGTTTAAAGTCAGTGGAGGGAGAGGATCCACCAAAAATTCTACATTTAAATCCTCGATTGAGAGG AGATTGGAGTCAGCATCCAGTCATTGAGCACAATACCTGCTATAGGATGCAATGGGGGACAGCTCAAAGGTGCGATGGTTTGCCATCCAAGAAAGATGAG GATATGCTGGTTGATGAACATGCGAGGTGTGAGAAATGGATGCGGGATGATAATGTAGATTCAAAAGAGTCGAAGACAGCCTCATGGTTCAAGAGATTTA TAGGGCGTGAACAGAAACCTGAAGTGACATGGCCGTTTCCTTTTGTGGAGGGCGGATTGTTTATCCTGACCTTGCGTGCTGGTGTTGATGGATACCATAT TACTGTTGGGGGGCGGCATGTGACCTCATTTCCATATCGTCCGGGATTTACCCTCGAAGATGCAACAGGATTAGCAATCAAAGGAGACGTAGATGTTCAT TCAGTTTTTGCAACTTCTCTGCCCAGCTCTCATCCAAGCTTCTCTCCTCAGCGAGTATTGGAAATGTCAGAGAAGTGGAAAGCTCATCCTTTACCAAAGA GTCCCATTCAACTTTTTATTGGGATCCTATCAGCTACAAATCACTTTGCAGAACGCATGGCAGTTAGAAAAACTTGGATGCAATCATCTGTAATCAAGTC TTCAAATGTAGTTGCTCGTTTCTTTGTTGCACTGAATCCAAGGAAGGAGGTGAATGCAGTGCTAAAAAGAGAGGCAGCTTACTTTGGTGATATTGTGATT TTGCCATTTATGGATCGCTATGAGCTTGTGGTTCTCAAAACTATTGCTATTTGTGAGTTTGGGGTTCGGAATGTCTCAGCTGCATACATCATGAAATGTG ATGATGATACATTTGTTAGGGTGGACACAGTCTTGAAAGAAATTGATCGTACCTCTCCCAACAAGTCTCTTTATATGGGCAATCTCAATCTCTTACATCG TCCCCTAAGAAATGGAAAATGGGCAGTTACTTTTGAGGAATGGCCTGAAGAAGTATATCCTCCTTACGCCAATGGACCTGGATATGTAATTTCTACTGAT ATTGCTAAATTTGTCATTGCTCAACATGGCAAACGAAGCCTCAGGCTCTTTAAGATGGAAGATGTTAGTATGGGAATGTGGGTTGAACAATTTAACAGCT CCACCCCTGTTCAGTACTCTCACAACTGGAAATTCTGTCAATACGGATGCTTGGAGAACTATTATACTGCACATTACCAATCCCCAAGGCAGATGATCTG TCTGTGGGACAAGTTGGCGAGAGGTCGGGCACAATGTTGCAGCTTTAGATGA
AA sequence Show only first row Show all	>Potri.006G011300.1 pacid=42767724 polypeptide=Potri.006G011300.1.p locus=Potri.006G011300 ID=Potri.006G011300.1.v4.1 annot-version=v4.1 MKRLKIEPSSTRRCKLSHMLLAVGAIYLVFLAFKFPHFLEIASMLSVDDSYAGLDSSSMVKDVEDSDLSKPSFSSVYKDAFHRKLEDNQNQNAPMMPSKE PLEDEKGGSKTIKPLQYRYGRITGEIMRRRNATMKLSPLERMADEAWLLGLKAWEEVEKYDGEEIGQSLLYEGKIESCPLWVSMSGEELAGGDKMMFLPC GLSAGSSITIVGTPHHAHQEYVPQLARLRNGNGIVMVSQFMIELQGLKSVEGEDPPKILHLNPRLRGDWSQHPVIEHNTCYRMQWGTAQRCDGLPSKKDE DMLVDEHARCEKWMRDDNVDSKESKTASWFKRFIGREQKPEVTWPFPFVEGGLFILTLRAGVDGYHITVGGRHVTSFPYRPGFTLEDATGLAIKGDVDVH SVFATSLPSSHPSFSPQRVLEMSEKWKAHPLPKSPIQLFIGILSATNHFAERMAVRKTWMQSSVIKSSNVVARFFVALNPRKEVNAVLKREAAYFGDIVI LPFMDRYELVVLKTIAICEFGVRNVSAAYIMKCDDDTFVRVDTVLKEIDRTSPNKSLYMGNLNLLHRPLRNGKWAVTFEEWPEEVYPPYANGPGYVISTD IAKFVIAQHGKRSLRLFKMEDVSMGMWVEQFNSSTPVQYSHNWKFCQYGCLENYYTAHYQSPRQMICLWDKLARGRAQCCSFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21060			Galactosyltransferase family p...		Potri.006G011300 [exp]	0	1
AT3G45400			exostosin family protein (.1)		Potri.013G067400 [exp]	3.60	0.8962
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.009G087200 [exp]	6.32	0.8916
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Potri.013G011500 [exp]	9.38	0.8888
AT4G33140			Haloacid dehalogenase-like hyd...		Potri.006G216500 [exp]	9.48	0.8817
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Potri.001G166000 [exp]	10.09	0.7991
AT4G26288			unknown protein		Potri.009G120300 [exp]	11.18	0.8834
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G014966 [exp]	11.61	0.8892
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Potri.019G032500 [exp]	13.85	0.8746
AT3G15810			Protein of unknown function (D...		Potri.006G067000 [exp]	14.24	0.8761
AT5G13560			unknown protein		Potri.010G212900 [exp]	14.69	0.8717

Compare expression of checked genes

Potri.006G011300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.