Plant FIBer expression Database

Potri.006G011600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs

No hit found
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G011600.1 pacid=42769826 polypeptide=Potri.006G011600.1.p locus=Potri.006G011600 ID=Potri.006G011600.1.v4.1 annot-version=v4.1
ATGGCCACTGTTGAGGTTGAAGCTGCTCCATCAATTCCTGAGACCGAGGTACCTAAGGTGACCAAGACTGAGGAGACAACAACAGAAACTGCACCACCTG
CCTCTGAGCCAGTAGCTGAAGAGCCAACAGAAGCAGCACCCGCTGATGCTCCAGCCGCAGAACCTGAAGCTGAACCTGCAGTTGAGGTTGAAACCAAGGA
GGTTGTAGAAGAACCAGCAAAAACTGAGCCTGAAGAGGTTGCAGCCCCAGCAGCAGAAGAAACTCCTGAGGACAAGCCTGAAGAGACTGTTGCTGAGGAG
ACTGTTGCTAAGGAGACTGTTGTCGAAGAGACTAAAGAGGAGGCAGCACCGGCTCCTGTTGAGGAAGAGAAGCCAGCAGAAGAAGAGAAGCCAGCTGAGA
CACCAGCTGCAGAGACAACCACCACAGAAGTTCCTGTGGAGACTAATGAGTGA
AA sequence
>Potri.006G011600.1 pacid=42769826 polypeptide=Potri.006G011600.1.p locus=Potri.006G011600 ID=Potri.006G011600.1.v4.1 annot-version=v4.1
MATVEVEAAPSIPETEVPKVTKTEETTTETAPPASEPVAEEPTEAAPADAPAAEPEAEPAVEVETKEVVEEPAKTEPEEVAAPAAEETPEDKPEETVAEE
TVAKETVVEETKEEAAPAPVEEEKPAEEEKPAETPAAETTTTEVPVETNE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G011600
[exp]
0 1
AT3G54950 pPLAIIIbeta, PL... patatin-related phospholipase ... Potri.015G122700
[exp]
4.69 0.9200
AT4G39410 WRKY ATWRKY13, WRKY1... ARABIDOPSIS THALIANA WRKY DNA-... Potri.005G086400
[exp]
10.72 0.8233 WRKY13.1
AT5G06940 Leucine-rich repeat receptor-l... Potri.006G056600
[exp]
12.24 0.8957
AT2G45470 AGP8, FLA8 FASCICLIN-like arabinogalactan... Potri.014G071700
[exp]
13.19 0.9018 Pt-FLA8.1
AT1G77690 LAX3 like AUX1 3 (.1) Potri.002G087000
[exp]
16.24 0.8935 PtrAUX8
AT3G45230 hydroxyproline-rich glycoprote... Potri.009G013500
[exp]
18.76 0.8724
AT3G05910 Pectinacetylesterase family pr... Potri.013G000900
[exp]
21.33 0.8910
AT3G42800 unknown protein Potri.018G065000
[exp]
22.24 0.8801
AT4G22250 RING/U-box superfamily protein... Potri.014G158900
[exp]
23.23 0.8855
AT3G55430 O-Glycosyl hydrolases family 1... Potri.008G056000
[exp]
27.34 0.8769 Pt-GNS2.1

Potri.006G011600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.