Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12570 842 / 0 UPL5 ubiquitin protein ligase 5 (.1) AT1G55860 184 / 3e-47 UPL1 ubiquitin-protein ligase 1 (.1.2) AT1G70320 181 / 2e-46 UPL2 ubiquitin-protein ligase 2 (.1) AT3G53090 131 / 8e-31 UPL7 ubiquitin-protein ligase 7 (.1.2) AT3G17205 126 / 2e-29 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT5G02880 77 / 4e-14 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 69 / 2e-11 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) AT1G55060 65 / 2e-11 UBQ12 ubiquitin 12 (.1) AT4G05050 63 / 2e-11 UBQ11 ubiquitin 11 (.1.2.3.4) AT1G53930 63 / 2e-11 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G012900 [exp] 1553 / 0 AT4G12570 853 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G059800 [exp] 1424 / 0 AT4G12570 733 / 0.0 ubiquitin protein ligase 5 (.1) Potri.002G110500 [exp] 193 / 4e-50 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 177 / 4e-45 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.001G368600 [exp] 176 / 1e-44 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.016G096500 [exp] 140 / 9e-34 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.010G150000 [exp] 116 / 3e-26 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.008G101300 [exp] 113 / 3e-25 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.016G085200 [exp] 71 / 5e-12 AT5G02880 1634 / 0.0 ubiquitin-protein ligase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010493 [exp] 1152 / 0 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10003792 [exp] 477 / 1e-161 AT4G12570 409 / 3e-136 ubiquitin protein ligase 5 (.1) Lus10027324 [exp] 462 / 3e-155 AT4G12570 373 / 1e-121 ubiquitin protein ligase 5 (.1) Lus10032830 [exp] 194 / 2e-50 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 188 / 2e-48 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 170 / 1e-42 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10039026 [exp] 135 / 1e-36 AT4G12570 97 / 7e-24 ubiquitin protein ligase 5 (.1) Lus10035589 [exp] 133 / 2e-31 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10008636 [exp] 99 / 1e-20 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10027323 [exp] 86 / 5e-18 AT4G12570 72 / 5e-14 ubiquitin protein ligase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0552 [poplar] [flax] Hect PF00632 [poplar] [flax] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Potri.006G011701.18 pacid=42768956 polypeptide=Potri.006G011701.18.p locus=Potri.006G011701 ID=Potri.006G011701.18.v4.1 annot-version=v4.1 ATGTCTCTTCCCCAATCACCCACCGCTGATTCTCTTCATCAACAGCGCTCCTCCACCGTTGATCACCGTGTCTCTTCCAAACGCAAACTAGACGATGTGG ATGACAACGACGCCGTTTTCTCTGACTTAATCTCTGTCAGGATGCGTAAAGACGACACCGAGTCATCCACCGGCAACAATCAAGAACAACAACAACAACC TCCCTCCATCTCCTCCACCAATCAGCTCTCCACGCGTGTCTCCGACGCCTCCACCTCTTCATCATCCACCAACTTCCCCTCCTCCGCCATGGGGACCACC ACACCCTCGCCGCTGCGGAGGTCGCAATCAAGACTCCAATTCTTTATCAGAATGATCTCCGATGCAACTCATGTTGTGATCAACGCGAACTCGAGCGATT CTGTTAAATCACTCCACGAACAGATTCGCGCGATGACCGGAATTCCGGTGATAGAGCAGAGATTAATCTACTTAGGTAAGCAATTGCAATACGAGAACAA ACTCTCCGATTACTCTATTGAGAACGATTCGATTCTTCATTTAGTCGGTCGAATGCGTAGCACTAGGCATCCTCGTACTTGTCAATTGATTAATGATATG GTTTCTTACATTTGTCGGATTTGTAAGTCTATATTGCCGTGTGGTGTTCATCCTTACACGTCAAAGCATATAAAGGAGTTGATGAATGAGTTCTTTAGTT TGACGCCCAAGGATGATAATGAGGATGCTTCGGGGCACTTGAATGTTTTTTTGTCCAATAGTGCACCGGCCGCGCTAGTTGCACTTTATGTTTCGAGTAT TAAAGGGAATAAGGAGTGTGCGGAGGGTGCTATTAGGCACTTTTTGAATTCGTGTAGGATTTCGTTGCCTAAGAATTTGCATTTACAGTGTGTGCCGATT GTGATGGAGTTTTGTAATTTGTTGAGGAAGGTTGGGAGTGACGATCCGTTGTATGTTGTTTGTAGGAGTTGTCTTGGTTCGTTGTTGGAGAATGGTGGGG GTACGTGTGGGTGGAGGTATCATGGAGGGGAGGAGGGGAAGGGAGTTGTTATGCAGGAGATTTTTCCATTTGTTAGTGAGTTGGGGAGCAAGTTGTCTAA AGATTTGACGGGGAGTGTGGCGGAGAGTATGGGGCCATCGGAGGCTGTTGTTAAGGATTTTTCAGCGTTTTTGATACCATTGCATAGTGTGATTTCCGAG CAAAGGGGATTTGGGAGTCCAATTTCGATGCCTTTGAAGAAGAGGGCGTTTAATTGTCCATTGTATGCGAAAGAAATTGAGCAGCTTCATGTGATATTCA TTGATTTGCTGGATATTATGGAGAAATGTCTTGAGAAAATGCAGGATTCTTCGAATTTGAAAACGAATGGAGAAGGTGAGTTGAATCATACAGGTTGGTC CCAATATTTGTTTATTTTGAAGGAGTTGAATAACATTGCTAAACTTTATAAGGGTGCTGAGGAAAAGTTTTGGACGGTTTTGAGGCTTAGAAAAGCTTCC TTGTGTGTGCTGATTGTTAGATACGCTAAACGAACTGATGATCATCAGTGGCTTCTTCAGCATAAGGATGTGACTGATTTTGACTCTAGGAGGCATTTGG CTATGATGATGTTCCCTGAGTTGAAAGAAGATTACGAGGATCTGCACGAGATGCTCATTGATCGGTCACAATTGTTGGCAGAGTCATTTGAGTACATAGT GCATGCCGAATCAGATACACTGCATGTTGGTTTATTTATGGAATTTAAAAATGAGGAAGCAACTGGTCCTGGTGTATTGCGTGAGTGGTTTTTCTTGGTT ACACAAGCTATATTTGATCCTCAAAATGCCCTTTTTGTGGCATGCCCAAGTGATCGTAGAAGGTTCTATCCTAATCCCGCATCTAAGGTGGATCCCATGC ACCTTGATTATTTCACATTCTCTGGTCGAGTGATTGCATTAGCTTTGATGCATAAAGTGCAAGTCGGCATTGTATTTGATCGTGTGTTTTTCTTGCAATT GGCTGGGATGCATATTTCTTTGGAAGACATACGGGATGCAGATCCATGCTTGTATAGCAGTTGCAAACAGATTCTGCAGATGGATCCTGAGTTCATTGAT TCAGATGCTTTGGGGCTGACATTTGTCAGAGAAGTTGAGGAGCTAGGATCCATAAAAGTTGTGGAACTTTGCCCTGGTGGGAAAGGCATTGTTGTAAATA GCAAGAACCGGGAGAAATATGTCAATCTGCTAATTCAACATCACTTTGTCACATCTATCTCTGACCCTGTATCTCGATTTGCACGTGGTTTTTCTGATAT TCTTAACCCTGGGGAACAGAAGCTCTTCTTCCGAAGCTTGGAGCTTGAAGATCTTGATTGGATGCTATATGGAAGTGAAAGTGCTATATGTGTGGAAGAC TGGAAGGCTCACACTGAGTACAGCAGCTACAAGGAAACTGATCCTCAGATATCCTGGTTCTGGGAGATTGTTGGGAGAATGTCAGCAGATCAGAGAAAGG TTCTTCTCTTCTTTTGGACCTCGGTGAAGTATCTACCTGTTGAGGGTTTCCGTGGTTTGGCCTCGCAACTTTACATTTACAAGTCCACAGAACCACATGA TCACCTTCCTTCATCTCATACATGCTTTTACCGGCTGTGTTTCCCACCTTATCCCTCCATGGCTATCATGCAAGATCGCCTCCGCGTCATCACCCAAGAA CATGTTGGATGCAGTTTTGGCACTTGGTAA
AA sequence Show only first row Show all	>Potri.006G011701.18 pacid=42768956 polypeptide=Potri.006G011701.18.p locus=Potri.006G011701 ID=Potri.006G011701.18.v4.1 annot-version=v4.1 MSLPQSPTADSLHQQRSSTVDHRVSSKRKLDDVDDNDAVFSDLISVRMRKDDTESSTGNNQEQQQQPPSISSTNQLSTRVSDASTSSSSTNFPSSAMGTT TPSPLRRSQSRLQFFIRMISDATHVVINANSSDSVKSLHEQIRAMTGIPVIEQRLIYLGKQLQYENKLSDYSIENDSILHLVGRMRSTRHPRTCQLINDM VSYICRICKSILPCGVHPYTSKHIKELMNEFFSLTPKDDNEDASGHLNVFLSNSAPAALVALYVSSIKGNKECAEGAIRHFLNSCRISLPKNLHLQCVPI VMEFCNLLRKVGSDDPLYVVCRSCLGSLLENGGGTCGWRYHGGEEGKGVVMQEIFPFVSELGSKLSKDLTGSVAESMGPSEAVVKDFSAFLIPLHSVISE QRGFGSPISMPLKKRAFNCPLYAKEIEQLHVIFIDLLDIMEKCLEKMQDSSNLKTNGEGELNHTGWSQYLFILKELNNIAKLYKGAEEKFWTVLRLRKAS LCVLIVRYAKRTDDHQWLLQHKDVTDFDSRRHLAMMMFPELKEDYEDLHEMLIDRSQLLAESFEYIVHAESDTLHVGLFMEFKNEEATGPGVLREWFFLV TQAIFDPQNALFVACPSDRRRFYPNPASKVDPMHLDYFTFSGRVIALALMHKVQVGIVFDRVFFLQLAGMHISLEDIRDADPCLYSSCKQILQMDPEFID SDALGLTFVREVEELGSIKVVELCPGGKGIVVNSKNREKYVNLLIQHHFVTSISDPVSRFARGFSDILNPGEQKLFFRSLELEDLDWMLYGSESAICVED WKAHTEYSSYKETDPQISWFWEIVGRMSADQRKVLLFFWTSVKYLPVEGFRGLASQLYIYKSTEPHDHLPSSHTCFYRLCFPPYPSMAIMQDRLRVITQE HVGCSFGTW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.006G011701 [exp]	0	1
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G059800 [exp]	1.00	0.9277
AT3G61800			unknown protein		Potri.014G099300 [exp]	2.44	0.8713
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.004G112300 [exp]	3.00	0.8361
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.010G093700 [exp]	5.47	0.8636	APK2.1
AT2G35050			Protein kinase superfamily pro...		Potri.001G123500 [exp]	6.92	0.8580
AT1G29760			Putative adipose-regulatory pr...		Potri.011G072200 [exp]	8.00	0.8416
AT5G19400		SMG7	Telomerase activating protein ...		Potri.006G038500 [exp]	11.48	0.8065
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	13.03	0.8517	APG9.1
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Potri.008G179700 [exp]	13.11	0.8014
AT1G20110			RING/FYVE/PHD zinc finger supe...		Potri.005G242700 [exp]	13.67	0.8200

Compare expression of checked genes

Potri.006G011701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.