Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 289 / 4e-94 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT4G22390 207 / 8e-63 F-box associated ubiquitination effector family protein (.1) AT3G06240 124 / 3e-31 F-box family protein (.1) AT3G23880 68 / 2e-12 F-box and associated interaction domains-containing protein (.1) AT3G07870 67 / 9e-12 F-box and associated interaction domains-containing protein (.1) AT1G12870 58 / 7e-09 F-box and associated interaction domains-containing protein (.1) AT4G09190 50 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT5G07610 49 / 6e-06 F-box family protein (.1) AT3G47150 47 / 2e-05 F-box and associated interaction domains-containing protein (.1) AT3G10240 46 / 2e-05 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G012500 [exp] 614 / 0 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 614 / 0 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 253 / 4e-80 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 231 / 1e-71 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G010800 [exp] 160 / 3e-45 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199800 [exp] 131 / 6e-34 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.017G058900 [exp] 119 / 7e-30 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.006G012900 [exp] 117 / 2e-29 AT4G12560 144 / 2e-39 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 111 / 7e-27 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039024 [exp] 407 / 3e-140 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10027322 [exp] 207 / 1e-65 AT4G12560 150 / 6e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10032458 [exp] 100 / 4e-23 AT4G12560 120 / 1e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10017605 [exp] 98 / 1e-22 AT4G12560 118 / 3e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038603 [exp] 89 / 4e-19 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10008871 [exp] 87 / 2e-18 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031512 [exp] 86 / 3e-18 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10008870 [exp] 84 / 2e-17 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10000190 [exp] 82 / 7e-17 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 82 / 7e-17 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.006G013200.2 pacid=42768640 polypeptide=Potri.006G013200.2.p locus=Potri.006G013200 ID=Potri.006G013200.2.v4.1 annot-version=v4.1 ATGTCGAGAATCCCACACGAGGTCATTCACGACATTTTGCTTCAACTTCCGGTGAAATCCCTCATCCGTTTCCGATCTCTATCAAAGCCAATTTGTTCCT TAATCGACGGCCCGGATTTCATCAATCTCCATCTAAACCATTCTATCACTACCAAATCTAATCACAGTATCATCCTCAAAGAGTGGGATCTTTTCGCTGT TGATTTTGATGCTTTATCTGATGCGGTGGAGGTTAAACATCATCCCCTTTATTCCGGTGGTGGAACGGAGGTTATCGGTTCGGTTAATGGGTTGGTGTTT TTGAGACGTTCTGAGACAAATATTGCTGTGTATAATTTGTCTACAAGGGAGTGTAAGAAATGTTATGTTGCGGAAACTGAGATTCCACGGCGGGATATGA CAACTGGGTATGTTTATTATGGGTTTGGTTATGATTCTTATGGTGATGATTACAAAGTGGTGAGAATGGCACAGTTCGTTAGAGAAGATGGCGGCGGCGA TGGTGGTGGTTTGGGTTGCGAGTATGAAGTTAAGGTTTATAGTTTAAAGAATGATAAGTGGAAGAAGATTGAGGGTTTGCCGATTCGGCTGAGGTTATTA AGCAAGCCCTTTTTTCATATTTTGAATAGGAGAGGGTATGGTGTTTTTGCAGGTCACGCTTTGCATTGGATTGTCCCGCAAAGGCGTGAACTTGGTATTA GAGATTGTGTTCTTGGTTTTGATATTAGGGATGATAAGTTTTTCGAATTGCCGCAGCCGGATTATGAGAACAAGGGTATGAACTTTCATGTTGATGTTGG GGTTCTAGAGGGGAATTTGTGTGTAATGTGTAATTATGAGCATGTTTGTGTTGATGTGTGGGTTATGAAAGAATATGGTGTGAAGGAATCTTGGTGTAAG ATGTTTTCGGTTCATGCGATTAAGTGGATTAGTGCTTTTATGTTTTTGAGACCTTTGGTTTATTCGAAAGGTGGTGATATGGTGTTATTGGAAGTGAATG GTGAGAAGCTATTGTGGTATGATTGGAAAAACAAGCATGCCAAGGTTGTAAGGGTTCGTGGTGGACCGAGCTCGTTTGGTTCTGAGATGTATGTGGAAAG CCTTATTAGGATTAATGATGGTGATCGAATTGGCTGGAAGAAGCAACAAGAGCTAGATGAGGAGGAGGAGGAGAAGAGGAAGACAAATAGGAATAAGAGG GATGATTTCCTGTCTGTGGGGTTCAAACTGAAGTTGTAA
AA sequence Show only first row Show all	>Potri.006G013200.2 pacid=42768640 polypeptide=Potri.006G013200.2.p locus=Potri.006G013200 ID=Potri.006G013200.2.v4.1 annot-version=v4.1 MSRIPHEVIHDILLQLPVKSLIRFRSLSKPICSLIDGPDFINLHLNHSITTKSNHSIILKEWDLFAVDFDALSDAVEVKHHPLYSGGGTEVIGSVNGLVF LRRSETNIAVYNLSTRECKKCYVAETEIPRRDMTTGYVYYGFGYDSYGDDYKVVRMAQFVREDGGGDGGGLGCEYEVKVYSLKNDKWKKIEGLPIRLRLL SKPFFHILNRRGYGVFAGHALHWIVPQRRELGIRDCVLGFDIRDDKFFELPQPDYENKGMNFHVDVGVLEGNLCVMCNYEHVCVDVWVMKEYGVKESWCK MFSVHAIKWISAFMFLRPLVYSKGGDMVLLEVNGEKLLWYDWKNKHAKVVRVRGGPSSFGSEMYVESLIRINDGDRIGWKKQQELDEEEEEKRKTNRNKR DDFLSVGFKLKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013200 [exp]	0	1
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.003G019100 [exp]	3.46	0.8296
AT3G13062			Polyketide cyclase/dehydrase a...		Potri.007G002700 [exp]	6.70	0.7659
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154700 [exp]	10.67	0.8425
AT5G38880			unknown protein		Potri.017G100300 [exp]	16.12	0.7979
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.010G101800 [exp]	16.73	0.8058	Pt-ANN5.1
AT3G26000			Ribonuclease inhibitor (.1)		Potri.008G179800 [exp]	21.56	0.8268
AT3G14172			unknown protein		Potri.001G164900 [exp]	28.26	0.7927
AT5G04460			RING/U-box superfamily protein...		Potri.010G231100 [exp]	29.47	0.7449
AT3G11590			unknown protein		Potri.004G199500 [exp]	31.30	0.7622
AT5G55000		FIP2	potassium channel tetramerisat...		Potri.019G038400 [exp]	39.68	0.7756

Compare expression of checked genes

Potri.006G013200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.