Plant FIBer expression Database

Potri.006G013300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45480 106 / 2e-23 Protein of unknown function (DUF594) (.1)
AT5G45470 104 / 7e-23 Protein of unknown function (DUF594) (.1)
AT5G45540 101 / 6e-22 Protein of unknown function (DUF594) (.1)
AT5G45530 98 / 7e-21 Protein of unknown function (DUF594) (.1)
AT5G45460 97 / 1e-20 unknown protein
AT4G19080 83 / 4e-17 Protein of unknown function (DUF594) (.1)
AT4G19090 84 / 1e-16 Protein of unknown function (DUF594) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G013600
[exp]
773 / 0 AT5G45460 119 / 8e-28 unknown protein
Potri.006G013400
[exp]
756 / 0 AT5G45480 115 / 2e-26 Protein of unknown function (DUF594) (.1)
Potri.006G013500
[exp]
629 / 0 AT5G45480 130 / 3e-31 Protein of unknown function (DUF594) (.1)
Potri.016G012400
[exp]
385 / 7e-124 AT5G45480 167 / 5e-43 Protein of unknown function (DUF594) (.1)
Potri.006G013750
[exp]
345 / 1e-108 AT5G45540 183 / 7e-49 Protein of unknown function (DUF594) (.1)
Potri.015G059200
[exp]
325 / 9e-101 AT5G45540 200 / 3e-54 Protein of unknown function (DUF594) (.1)
Potri.006G011100
[exp]
319 / 2e-99 AT5G45480 173 / 1e-45 Protein of unknown function (DUF594) (.1)
Potri.015G107900
[exp]
300 / 4e-91 AT5G45540 186 / 3e-49 Protein of unknown function (DUF594) (.1)
Potri.015G116201
[exp]
298 / 2e-90 AT5G45540 203 / 2e-55 Protein of unknown function (DUF594) (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF13968 DUF4220 Domain of unknown function (DUF4220)
Representative CDS sequence
>Potri.006G013300.3 pacid=42768149 polypeptide=Potri.006G013300.3.p locus=Potri.006G013300 ID=Potri.006G013300.3.v4.1 annot-version=v4.1
ATGGACGTGTCGTCAAAGATGGGTTTAGTATATTTGTCCCAAGATATTGAAGAACTATGGAATGAATGGCAGATTCGCTCATTAATGTTACTTGGTCTCC
TTCTTCAAATCATCCTCACCATTTTAGGAGAACAACGGAAGTATACTGTTGGGCTCGGGGATTTTCTTTGGTTAGCATACTTGTCCTCAGATTCGGTGGC
AATCTTTTCATTGGGCATCCTTGCTCGCAGCGTAGCCAACACCACAAATCCGAACTTGATTCCAGTGTTTTGGGCACCACTCCTTCTAGTTCACATTGGT
GGCCCTGGAACTATCTCTGCTTATTCAATGCATGAACTCGACAAATTATTGATAAATCACCTTCTTCAGCTAGTAACCCGAGTTGGAGTTGTTGGTTATG
TCTTGTTCAGGTTGAGAGAAAATGCCTTCATGTTGGTAGCCATTCCCATCTTTATTTCAGGAATGATCAAGTATGGTGAAAGGATTTGGGTTTTCAAAAG
AAACAAGGAATCCAATAACTTGTCACAGCAACCTTTTGCAAAACGACCTTGCATCCCGTCTGAAGATTTAATTTCCTTAACCGATAGTTCAAGTGAGGTC
AGCTATCTTCATGAAGCTCATCTTTTGTTCAAAACGTCTAAGATGCTGTTCCAAAATCTTGATCTCGTCAATTTGGATCAAAGAATCACCTATGATTTGG
TTTCTGAAAAGAACGCCGAGGAAGCCTTCCAGTTGACAGAAATTGAGCTGGGACTCAAGTATGATCGCCTTTATTCGAAGGTGGCAACGGTTTCCTGGCC
TCGCTTCATTATCCGCTCAGTCACTTTCTTATCCTCTATTTTTGCTTTAGTTTCCTTCTCAATAATGATAAAGAGCAAGAGTGTCTATTCGAAAAACGAT
AGAATTATATCTTACGTGTTGCTGAGTGGAGTTGTCTGCCTTGAAAGTTACTCTATCATTGGGCATCTCTTTTCCGACTGGACTATGATTTGGCTTATTA
GGCTGGAAAAAACATTTCCTAATCTCTATACAACCCGTTGTTTTTCTCTGTTACTATCTTTTTCCAGGAAGCGCAAAAGATGGTCAAGATTAATGGGACA
ACACAACCTAATAAGTGCTCTATCAAAGAAACCAGTGAACAAGCTTCGTAAGAAGTACTTTCCAGGGAATTGGAACATTCATAGCAGGGTGGATGCGGAC
AAGGATTTAAAAGAATTGATCTTCAAACAAGTTATGCATAAACGTTCAAGGTACGAACGTTTAAGGTACGAACGTTCAAAGAACTATCCCGATACCAGTG
ATTTCCCTGTCCTCCTTAAGCTATTGGAAGAGAGAGGTTGCAATTCGCTTCAAAGCAAGGGTTGTTTCCATGAATTGGGATGGAGTGTGGATGATGCAGA
ATTCAGTCATAGCCTCCTCACTTGGCACATTGCTACTCATGTTTGTTACATTGACGATTCCAGGAAGAACGGTTTTGTGAATTATCAAAATTGCGCAATG
AGTAGATCATTATCTAACTACATGTTGTATCTCCTGGTTCAGTGTCCAAATATGTTAGCGATAGAGCTCAGCGGAACAAGGTATACTGATACAAGAATTC
ATTTGCATCGTCTCCTATTCATCAGGAATGCTCATAAAGAAGCGGAGAACCACATTCCCATGGATAAATTGGATGCATTATCGTTTCCCAAAGCTCAAGT
GAAAGCATTTTTTTATGAATTGCTTCAAAGTCCGTCTACCATGTTAAAAGAAATTAGAGAACAAGAGGAAGAAAAGTCAGCCCAAAGTCCGTCTACCATG
TTAAAAGAAATTAGAGAACAAGAGGAAGAAAAGTCAGCCCAAAGTCCGTCTACCATGGTAAAACAAATTAGAGAACAAGAGGAAGAAAAGTCAGCCCTAC
TAGATGGTTGCAGGCTTGCTATGTCATTGCAGTCATCGGAGTTACAGGATGGTTGGCCAAATGAAAAGAAATGGGAAATGATAAGTGAAGTGTGGGTGGA
AATGCTGATGTATGCTGCAAGTCATTCTAGATGGAAGGAGCATGCTGATGCACTTGGCCGAGGTGGGGAGCTACTCACTCATGTGTGTATTCTCATGGCA
CATCTCGGTTTAAGTAAGCAATGTCGTCCACCTGCACTAAGTAAGCAATTAGATGAATATTTTCCCGGGCCTGTCGTCTCTGGGAATGAGGTATAG
AA sequence
>Potri.006G013300.3 pacid=42768149 polypeptide=Potri.006G013300.3.p locus=Potri.006G013300 ID=Potri.006G013300.3.v4.1 annot-version=v4.1
MDVSSKMGLVYLSQDIEELWNEWQIRSLMLLGLLLQIILTILGEQRKYTVGLGDFLWLAYLSSDSVAIFSLGILARSVANTTNPNLIPVFWAPLLLVHIG
GPGTISAYSMHELDKLLINHLLQLVTRVGVVGYVLFRLRENAFMLVAIPIFISGMIKYGERIWVFKRNKESNNLSQQPFAKRPCIPSEDLISLTDSSSEV
SYLHEAHLLFKTSKMLFQNLDLVNLDQRITYDLVSEKNAEEAFQLTEIELGLKYDRLYSKVATVSWPRFIIRSVTFLSSIFALVSFSIMIKSKSVYSKND
RIISYVLLSGVVCLESYSIIGHLFSDWTMIWLIRLEKTFPNLYTTRCFSLLLSFSRKRKRWSRLMGQHNLISALSKKPVNKLRKKYFPGNWNIHSRVDAD
KDLKELIFKQVMHKRSRYERLRYERSKNYPDTSDFPVLLKLLEERGCNSLQSKGCFHELGWSVDDAEFSHSLLTWHIATHVCYIDDSRKNGFVNYQNCAM
SRSLSNYMLYLLVQCPNMLAIELSGTRYTDTRIHLHRLLFIRNAHKEAENHIPMDKLDALSFPKAQVKAFFYELLQSPSTMLKEIREQEEEKSAQSPSTM
LKEIREQEEEKSAQSPSTMVKQIREQEEEKSALLDGCRLAMSLQSSELQDGWPNEKKWEMISEVWVEMLMYAASHSRWKEHADALGRGGELLTHVCILMA
HLGLSKQCRPPALSKQLDEYFPGPVVSGNEV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45480 Protein of unknown function (D... Potri.006G013300
[exp]
0 1
AT3G03620 MATE efflux family protein (.1... Potri.015G139400
[exp]
9.38 0.8187
AT5G14090 unknown protein Potri.001G059100
[exp]
11.13 0.8330
AT4G13540 unknown protein Potri.008G174400
[exp]
11.48 0.8039
AT1G53380 Plant protein of unknown funct... Potri.001G387700
[exp]
12.68 0.8208
AT5G62390 ATBAG7 BCL-2-associated athanogene 7 ... Potri.015G126800
[exp]
16.52 0.7896 CBP.1
AT5G45480 Protein of unknown function (D... Potri.006G013500
[exp]
17.66 0.8426
AT1G03670 ankyrin repeat family protein ... Potri.013G133900
[exp]
20.19 0.8346
AT1G52190 Major facilitator superfamily ... Potri.001G185700
[exp]
22.24 0.8075
AT2G36870 XTH32 xyloglucan endotransglucosylas... Potri.006G122900
[exp]
25.09 0.8149 Pt-XTH32.1
AT3G62110 Pectin lyase-like superfamily ... Potri.002G186900
[exp]
25.51 0.8040

Potri.006G013300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.