Plant FIBer expression Database

Potri.006G013500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45480 130 / 2e-31 Protein of unknown function (DUF594) (.1)
AT5G45460 126 / 5e-30 unknown protein
AT5G45540 126 / 6e-30 Protein of unknown function (DUF594) (.1)
AT5G45530 121 / 2e-28 Protein of unknown function (DUF594) (.1)
AT5G45470 117 / 4e-27 Protein of unknown function (DUF594) (.1)
AT4G19080 105 / 2e-24 Protein of unknown function (DUF594) (.1)
AT4G19090 102 / 2e-22 Protein of unknown function (DUF594) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G013400
[exp]
701 / 0 AT5G45480 115 / 2e-26 Protein of unknown function (DUF594) (.1)
Potri.006G013600
[exp]
651 / 0 AT5G45460 119 / 8e-28 unknown protein
Potri.006G013300
[exp]
632 / 0 AT5G45480 106 / 2e-23 Protein of unknown function (DUF594) (.1)
Potri.006G013750
[exp]
480 / 5e-162 AT5G45540 183 / 7e-49 Protein of unknown function (DUF594) (.1)
Potri.016G012400
[exp]
438 / 2e-145 AT5G45480 167 / 5e-43 Protein of unknown function (DUF594) (.1)
Potri.006G010900
[exp]
399 / 4e-131 AT5G45540 173 / 1e-45 Protein of unknown function (DUF594) (.1)
Potri.015G059200
[exp]
398 / 1e-129 AT5G45540 200 / 3e-54 Protein of unknown function (DUF594) (.1)
Potri.006G011100
[exp]
388 / 5e-127 AT5G45480 173 / 1e-45 Protein of unknown function (DUF594) (.1)
Potri.015G107800
[exp]
390 / 3e-126 AT5G45540 213 / 8e-59 Protein of unknown function (DUF594) (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04578 DUF594 Protein of unknown function, DUF594
PF13968 DUF4220 Domain of unknown function (DUF4220)
Representative CDS sequence
>Potri.006G013500.1 pacid=42767252 polypeptide=Potri.006G013500.1.p locus=Potri.006G013500 ID=Potri.006G013500.1.v4.1 annot-version=v4.1
ATGGATACGCTTCGAATATTGATGTTACTCAGTCTCTTTCTGCAAACTATCCTCGCCATTTTTGGTCGTCGGCGGAAGTGCTTTACTGGATTCTGGCTTC
GTTCTGTTGTTTGGTTAGCATACTTGTCAGCAGACTTGGTGGCAACTTTATCATTGGGTATCCTAGTTCGCAGCCAAACCAACTCTGCAAATCCTAACAT
GATTCCTGTATTTTGGGCTCCAATCCTTCTTCTTCATCTTGGTGGCCCGGAAACTATTACGGCTTATTCATTGGCAGACAATGAATTATGGCTAAGGCGC
CTTGTTGAGCTAGTAATCCAAGCTGGTGTGGCTTCTTATGTCCTGTTCAAGTTATGGAGCAAGGATACAATCATATTTGTAGCCATTCCCATCTTTGTTT
CAGGAATTATTAAGTATGGGGAGAGGATTTGGGCTTTCAGGTTAGCAACCTTAGAGGATTTTAGCATCAGAAGAGAATATATATCATCCAGCAGCAGAAG
TGCATATGAGGTCAGAATTGTTCGTGAAGCTCGTCTTTTGTTCAAAGCGTTCCAGAAGCTGTCCACAAATTTTCTTGTCTTCGATTTTGATCAAACCAAG
ACCTATGAATTGGTTTCTAAGAAAACTGCGGAAGAAGCCTTCCAGTTGATAGAAATAGAGCTGGGATTCCTGTATGATCGGATTTATTCTAAGGTGACAG
AGATTTCTTGGCTACGCGTCATTCTCCACTCTATCACCTGCTTATCCTCTATTTCTGCATTAGTCTTCTTCTCAATAATGACAACGAGAAAGAACGTCTA
TTCAAAAAAGGATACGATGATATCTTACTTGTTGCTGGTTGGAGCTGTCTTGCTTGACTGTTATTCTATCACTGTGCTTCTCTTGTCCGACTGGGCTGTG
ATTTGGTTTACTAGTAGTAAATTAGTGGGCGATTTTCTGTATCGAATCAATTGTCTTTCTCCGTTACTATCATTTTGTAGGGAGCAGAAAAGATGGTCAA
GATCTATGGGACAACACAACTTAACAAGTGCTCAATCGAACAAGCCATTGAACGAGCTTCGTAAGCAGTACTTCGCAGGGAAATGGAACATTCATAGCCG
GGTGGATGTGGATGAGGTTTTAAAAGAATTGATCTTCAAACAAGTAAAGGATAAACGTTCGAGGTACGATCCCGATACCATTGATTTCCTTACCCTCCTT
AAGCTATTGGAAGAGAGAGGTAACAATGCGCTTCAAAGATATGATTGTTTCGATAAACTGGGATGGAGCGTGACTCATGTAGAATTCAGTCAAAGCCTCC
TCATTTGGCACGTTGCTACTCTTGTTTGTTACATTGACGATTCTCAGAATAATAGTTTTGCCAAGGAACGAAATTGCGTAATGAGCAGCAGATCATTATC
CGATTACATGTTGTATCTCCTGGTTTATCGTCCAACTATGTTAGCGATAAAGCTCAGCGGAACAGGGTATGCAGAAACTACCACTCATTTGGGTCGTCTC
CTTCGCAGGAATACCTTAGATGAATTGCATGCGTTATTTCTCAAAGAATTGCTTCCAGATCCGCCTGCCATGTTAAATAAAATTAAACTTACTGACGCAG
GAGGAATGTCAGCCCTGCTAGATGGTTGCGTGCTTGCTATGTCATTGCAGACACTGGATGGTTGTCCAAATGAAAAGAAATGGGAAATGATAAGTGAAGT
GTGGGTGGAAATGCTGATGTATGCTGCAAGTCATTGTGGATGGAAGCAGCATGCTGATGCACTTGCTCGAGGTGGGGAGCTACTCACTCATGTGTGTCTT
CTCATGTCACATCTCGGTTTAAGCAAGCCATGTCGACCTGAAGTAAGTAAACAATATTTAGCTGACCAGTCTAAAAGGCTTGATGATCTGTCTGAACGTC
AATGGGTCTATGAGATTCCTCTTGCTTAG
AA sequence
>Potri.006G013500.1 pacid=42767252 polypeptide=Potri.006G013500.1.p locus=Potri.006G013500 ID=Potri.006G013500.1.v4.1 annot-version=v4.1
MDTLRILMLLSLFLQTILAIFGRRRKCFTGFWLRSVVWLAYLSADLVATLSLGILVRSQTNSANPNMIPVFWAPILLLHLGGPETITAYSLADNELWLRR
LVELVIQAGVASYVLFKLWSKDTIIFVAIPIFVSGIIKYGERIWAFRLATLEDFSIRREYISSSSRSAYEVRIVREARLLFKAFQKLSTNFLVFDFDQTK
TYELVSKKTAEEAFQLIEIELGFLYDRIYSKVTEISWLRVILHSITCLSSISALVFFSIMTTRKNVYSKKDTMISYLLLVGAVLLDCYSITVLLLSDWAV
IWFTSSKLVGDFLYRINCLSPLLSFCREQKRWSRSMGQHNLTSAQSNKPLNELRKQYFAGKWNIHSRVDVDEVLKELIFKQVKDKRSRYDPDTIDFLTLL
KLLEERGNNALQRYDCFDKLGWSVTHVEFSQSLLIWHVATLVCYIDDSQNNSFAKERNCVMSSRSLSDYMLYLLVYRPTMLAIKLSGTGYAETTTHLGRL
LRRNTLDELHALFLKELLPDPPAMLNKIKLTDAGGMSALLDGCVLAMSLQTLDGCPNEKKWEMISEVWVEMLMYAASHCGWKQHADALARGGELLTHVCL
LMSHLGLSKPCRPEVSKQYLADQSKRLDDLSERQWVYEIPLA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G45480 Protein of unknown function (D... Potri.006G013500
[exp]
0 1
AT1G60500 DRP4C Dynamin related protein 4C (.1... Potri.013G119900
[exp]
3.46 0.9584
AT3G22400 ATLOX5, LOX5 Arabidopsis thaliana lipoxygen... Potri.014G177200
[exp]
5.83 0.9423
Potri.010G001250
[exp]
7.68 0.8781
AT5G45480 Protein of unknown function (D... Potri.006G011100
[exp]
8.06 0.9361
AT5G42930 alpha/beta-Hydrolases superfam... Potri.005G138800
[exp]
8.48 0.9294
AT4G33490 Eukaryotic aspartyl protease f... Potri.007G099301
[exp]
8.83 0.9398
AT3G17380 TRAF-like family protein (.1) Potri.008G005650
[exp]
14.69 0.9349
AT1G54400 HSP20-like chaperones superfam... Potri.013G054800
[exp]
16.73 0.9321
AT5G45480 Protein of unknown function (D... Potri.006G013300
[exp]
17.66 0.8426
AT4G19090 Protein of unknown function (D... Potri.012G018500
[exp]
18.49 0.9275

Potri.006G013500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.