Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45460 120 / 7e-28 unknown protein AT5G45470 117 / 4e-27 Protein of unknown function (DUF594) (.1) AT5G45540 117 / 8e-27 Protein of unknown function (DUF594) (.1) AT5G45480 117 / 1e-26 Protein of unknown function (DUF594) (.1) AT5G45530 112 / 1e-25 Protein of unknown function (DUF594) (.1) AT4G19090 102 / 2e-22 Protein of unknown function (DUF594) (.1) AT4G19080 97 / 1e-21 Protein of unknown function (DUF594) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G013400 [exp] 870 / 0 AT5G45480 115 / 2e-26 Protein of unknown function (DUF594) (.1) Potri.006G013300 [exp] 793 / 0 AT5G45480 106 / 2e-23 Protein of unknown function (DUF594) (.1) Potri.006G013500 [exp] 659 / 0 AT5G45480 130 / 3e-31 Protein of unknown function (DUF594) (.1) Potri.006G013750 [exp] 476 / 5e-159 AT5G45540 183 / 7e-49 Protein of unknown function (DUF594) (.1) Potri.016G012400 [exp] 429 / 7e-141 AT5G45480 167 / 5e-43 Protein of unknown function (DUF594) (.1) Potri.006G010900 [exp] 378 / 1e-121 AT5G45540 173 / 1e-45 Protein of unknown function (DUF594) (.1) Potri.006G011100 [exp] 343 / 1e-108 AT5G45480 173 / 1e-45 Protein of unknown function (DUF594) (.1) Potri.015G059200 [exp] 338 / 2e-105 AT5G45540 200 / 3e-54 Protein of unknown function (DUF594) (.1) Potri.015G116201 [exp] 325 / 2e-100 AT5G45540 203 / 2e-55 Protein of unknown function (DUF594) (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04578 [poplar] [flax] DUF594 Protein of unknown function, DUF594 PF13968 [poplar] [flax] DUF4220 Domain of unknown function (DUF4220)
Representative CDS sequence Show only first row Show all	>Potri.006G013600.2 pacid=42767989 polypeptide=Potri.006G013600.2.p locus=Potri.006G013600 ID=Potri.006G013600.2.v4.1 annot-version=v4.1 ATGGACGTGTCGTCAAAGATTGATTTAGCCCAATTTCTGTCTCAAGATATTGTAGAACTATGGAATGAATGGCAGATTCGGTCATTAATGTTACTCAGTC TCCTTCTGCAAATCTTGCTCACCATTTTTGGAGAACGACGGAAGTATACTAGTGGACGTTTGCTTGGGACTTTTCTTTGGGTAGCATACCTGTCTGCAGA TTGGGTGGCAACTTTTTCGTTGGGTATCCTTGCTCGCAGCGAAGCCGACTCCGCAAATCCGAAATTAATTCCTGTATTTTGGGCTCCAATCCTTCTTGTT CACCTTGGTGGCCCTGGAACTATTCCTGTTTATTCAATGGATCAAGCCAGCAAATTATTGATAGGTCGCCTTCTTCAGCTAGTAACCCGAGTTGGTGTGG CTTGTTATGTCTTGTTCAGGTTATGGAACAACAATGTCATCACGTCGGTATTCATTCCCATCTTTGTTTCAGGAATCATCAAATATGGTGAAAGGATTTC GGTTTTGACGAGACTCCACGTATACAATAATGTGTCGCCACGACCTTGTGCGGAAGTACATCGCATCAAGATTAAAGATATATTACCCTGCTACAAGAAT ACAAGAAGTAATGTCATATATCTCCATGAAGCTCATATTTTATATAAAACGTTCCAGATACTGTCCAAGAATTTTGATCTCGTCAGATCGGATCAAAAAT TCACCTATGATTTGGTTTCTAAAAAGGAAGCGGAGGAAGCCTTCCACTTGACAGAAGTTGAGCTGGGATTAAAGTATGATCGGTTTTATTCTAAGGTGAC AAGGATTTCCAGGTCTCGCGTCATTCTCCGCTCTACCACCTTCTTATCATCTATTTCTGCATTAGTTTCCTTCTCAATAATGACAAAGAGCAATGGTGTC TATTCGAAAAATGATAAGATTATATCTTACGTGTTGCTGAGTGGAGTTGTGTGCCTTGAAACTTATTCCATCATTATGCAACTCTTTTCCGACTGGACTA TGATTTGGCTTACCAGTACTAGTGAAAGAGCTGGTGGTATTCCCCGTGGAATCAATTGTCTTTCTCTGTTACTAACATTTTGGAGGAAGCGCAAAAGATG GTGGTCAGGATCTATGGGACAACACAACCTAATAAGTGCTCAATCAAACAAACCAGTGAACAAGCTTCTTAAGAAGTACTTTCCATGGATCATAGGGAAC ATTGATAGCCGGAAAAAAGTGGGCAAGGATTTAAAAGAATTGATCTTCAAACAAGTCAAGGATAAACGTTCAAGGTACGATCCTGATTCCAGTGATTTCA CTTTCCTCAAGAATCTATTGAAAGAGAGAGGTCGCGAGGCACTTCAAAGCAAGGATTGCATCGGTAAATTTGGATGGAGTGTGGATGGTGTAGAATTCAT TCATAGCCTCCTCACTTGGCACATTGCTACTCATGTTTGTTACTTATATGATTCTGATCAGAAGAATGGTTTTCACAAGAAGCGAAAAAGTGTAATATTG AACAGCACATTATTATCCGATTACATGTTGTATCTCCTGGTTAATTGTCCAACCATGTTAGCGAGAGAGCCCAGCGAAACAAGGTATGATGATACGAGAA TTCATTTGCGTCGTCTCCTTTTCTGGAATACACATAAAGAAGTGAAGCTCAACATTTCCTTGGAAGAATTGAATGCATTATCGTTTCAGGAAGCTGAAGT GAAAGCCTTTTTCAAAGAATTGCTTCAAAGTCCGTCTACCGTGTTAAAGGAAATTGAAGAACAAGGCAAAGGAGAAATGTCAGCCCTACTAGATGGTTGC ATGCTTGCTGTGTCATTGCAGTCATTGGAGAGACGGGATGGTTGGTCAAATGACGAGAAATGGGAAATGATAAGTCATGTGTGGGTGGACATGGTTATGT ATGCCGCAAGTCATTGTGGATGGAAGCAGCACACTCATGCACTTGCCCGAGGTGGGGAGCTACTCACTCATGTCTGTCTTCTCATGGCACATCTCGGTTT AAGCAAGCAGTGTCGACCTGCAATAAGTGAACAATTAGCTGATCGGTCTACAAGGCTTGCTGGTATTCTTGAGTCTGAAAAACCTAGCTCCCTGGGTCCG AGCTTCATGTCAAAAGATACAACTAATGGGACTAAAACGAATCTTGACTCGATCCGCAGCTCATGTTATCTCCAAATATACAAACGAAGCCTGTCTCCTT TTACCATATCCTGA
AA sequence Show only first row Show all	>Potri.006G013600.2 pacid=42767989 polypeptide=Potri.006G013600.2.p locus=Potri.006G013600 ID=Potri.006G013600.2.v4.1 annot-version=v4.1 MDVSSKIDLAQFLSQDIVELWNEWQIRSLMLLSLLLQILLTIFGERRKYTSGRLLGTFLWVAYLSADWVATFSLGILARSEADSANPKLIPVFWAPILLV HLGGPGTIPVYSMDQASKLLIGRLLQLVTRVGVACYVLFRLWNNNVITSVFIPIFVSGIIKYGERISVLTRLHVYNNVSPRPCAEVHRIKIKDILPCYKN TRSNVIYLHEAHILYKTFQILSKNFDLVRSDQKFTYDLVSKKEAEEAFHLTEVELGLKYDRFYSKVTRISRSRVILRSTTFLSSISALVSFSIMTKSNGV YSKNDKIISYVLLSGVVCLETYSIIMQLFSDWTMIWLTSTSERAGGIPRGINCLSLLLTFWRKRKRWWSGSMGQHNLISAQSNKPVNKLLKKYFPWIIGN IDSRKKVGKDLKELIFKQVKDKRSRYDPDSSDFTFLKNLLKERGREALQSKDCIGKFGWSVDGVEFIHSLLTWHIATHVCYLYDSDQKNGFHKKRKSVIL NSTLLSDYMLYLLVNCPTMLAREPSETRYDDTRIHLRRLLFWNTHKEVKLNISLEELNALSFQEAEVKAFFKELLQSPSTVLKEIEEQGKGEMSALLDGC MLAVSLQSLERRDGWSNDEKWEMISHVWVDMVMYAASHCGWKQHTHALARGGELLTHVCLLMAHLGLSKQCRPAISEQLADRSTRLAGILESEKPSSLGP SFMSKDTTNGTKTNLDSIRSSCYLQIYKRSLSPFTIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45460			unknown protein		Potri.006G013600 [exp]	0	1
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.007G007100 [exp]	3.46	0.7406
AT5G42470			unknown protein		Potri.002G021700 [exp]	10.24	0.6632
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.004G143700 [exp]	12.24	0.6887
AT5G14230			unknown protein		Potri.010G057300 [exp]	27.69	0.6384
AT1G75060			unknown protein		Potri.001G101600 [exp]	53.47	0.6668
AT5G57123			unknown protein		Potri.018G140500 [exp]	89.01	0.6062
AT5G62620			Galactosyltransferase family p...		Potri.010G040400 [exp]	94.48	0.6371
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.004G078200 [exp]	103.47	0.6446
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Potri.002G108000 [exp]	122.78	0.5859	Pt-IAA8.4
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.003G192500 [exp]	125.29	0.5959

Compare expression of checked genes

Potri.006G013600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.