Plant FIBer expression Database

Potri.006G013900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47560 759 / 0 ATTDT, ATSDAT tonoplast dicarboxylate transporter (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027321
[exp]
571 / 0 AT5G47560 553 / 0.0 tonoplast dicarboxylate transporter (.1)
Lus10039023
[exp]
336 / 1e-113 AT5G47560 332 / 2e-112 tonoplast dicarboxylate transporter (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0182 IT PF03600 CitMHS Citrate transporter
Representative CDS sequence
>Potri.006G013900.3 pacid=42769187 polypeptide=Potri.006G013900.3.p locus=Potri.006G013900 ID=Potri.006G013900.3.v4.1 annot-version=v4.1
ATGAACGGTGATCACACCCCTAATCTCAACTCTGATGATCCCAAGACACCACTTCTCCCAGTCCATGATCCAATTCAAAGGTCACCAAGTTCCAATTCAT
CTCTAACTTCCCTGATCTTCACACCAAACAATTTCTACATCTTGCTAGGACCCCTTCTGTGCACCCTTATATGTCTTTTGGTCAAGCTGGATGCTCCGGT
GACTAGCATATACATGTTAGCTATTCTTGCTTGGATATTTTCTTGGTGGTTCACTGAGGCTGTGCCTATGCCCATCACCTCCATGGCACCTCTCTTTCTG
TTTCCTCTATTTGGAATTGGTTCTGCTGATAGTGTTGCTCGATCTTACATGGATGATGTGATTGCTCTTGTTCTTGGGAGCTTCATTCTTGCTCTTGCTG
TTGAGCATTATAACATTCATAAGAGATTGGCTTTAAATATAACGATGCTGTTCTGTGGAGATCCATTGAATCCACCACTGCTCCTCCTTGGAATTTGTGC
CACCACAGCTTTTGTCAGCATGTGGATGCACAACGTGGCAGCGGCTGTTATAATGATGCCAGTGGCCACTGGTATCTTACAGCGTCTGCCAAGGGGTCCC
ACTCAATCCAACGTTGTGGGCAAATTCTGCAAAGCAGTGGTTCTTGGGGTCATATATTCTGCAGCTATAGGAGGGATGAGTACCTTGACAGGGACAGGCG
TTAATCTGATATTAGTGGGTATGTGGAAGAGCTATTTTCCTGAGGCAAATCCCATCAGCTTTAACACATGGTTCTTCTTTGGGTTTCCTTTAGCTTTGGT
GATTTTCTTTGCTTTGTGGGCCATTCTTTGTTTGCTGTATTGCTCAAAGGGCTCAGGACAGGTCCTTTCTGCTTATTTGGACAAAGCCCACCTTAAGAGT
GAGCTTGAATTGTTAGGTCCGATGGCTTTTGCTGAAAAGATGGTATTGGCTGTTTTTGGGATGCTAATAGTCCTATGGATGACAAGAAGTATAACGGATG
ACATTCCTGGTTGGGGAGCTCTCTTCAATGGACTTGCCGGCGATGGAACCGTTAGTGTTATGATGGCAACCTTATTGTTCATAATTCCAAACAAGAAGCA
GAGGGGTGAGAAATTGATGGACTGGAACAAATGCAAGAAACTACCATGGAACATTGTGTTGTTGCTAGGAGCAGGTTTCGCCATCGCCGATGGAGTGAAG
ACTAGCGGCCTGGCTGATGTGTTATCCAAGGCATTAGACTTCTTGGAAGAGGTACCATACTTAGCCATTGCACCTATGGTGTGTCTGATAAGTGCCACAA
TCACTGAATTCACTTCAAACAACTCAACCACCACCCTTGTGGTTCCTCTACTGATCCAAATTGCGAAGACGATGCATGTGCATCCACTTCTCCTCATGGT
TCCTGGGGCAATCGGAGCACAGTTTTCGTTCTTGCTTCCAACTGGAACACCTTCAAATATTGTGGGGTTCAGTACAGGGCATATTGAGATCAAAGACATG
ATCAAGACAGGAGTGCCACTTAAGATTTTTGGCATTGCTGCACTATCTCTTCTCATGCCTACACTAGGAGCTTATGTTTTCGGGACAAATGGAGAAGTTT
AA
AA sequence
>Potri.006G013900.3 pacid=42769187 polypeptide=Potri.006G013900.3.p locus=Potri.006G013900 ID=Potri.006G013900.3.v4.1 annot-version=v4.1
MNGDHTPNLNSDDPKTPLLPVHDPIQRSPSSNSSLTSLIFTPNNFYILLGPLLCTLICLLVKLDAPVTSIYMLAILAWIFSWWFTEAVPMPITSMAPLFL
FPLFGIGSADSVARSYMDDVIALVLGSFILALAVEHYNIHKRLALNITMLFCGDPLNPPLLLLGICATTAFVSMWMHNVAAAVIMMPVATGILQRLPRGP
TQSNVVGKFCKAVVLGVIYSAAIGGMSTLTGTGVNLILVGMWKSYFPEANPISFNTWFFFGFPLALVIFFALWAILCLLYCSKGSGQVLSAYLDKAHLKS
ELELLGPMAFAEKMVLAVFGMLIVLWMTRSITDDIPGWGALFNGLAGDGTVSVMMATLLFIIPNKKQRGEKLMDWNKCKKLPWNIVLLLGAGFAIADGVK
TSGLADVLSKALDFLEEVPYLAIAPMVCLISATITEFTSNNSTTTLVVPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFSTGHIEIKDM
IKTGVPLKIFGIAALSLLMPTLGAYVFGTNGEV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G47560 ATTDT, ATSDAT tonoplast dicarboxylate transp... Potri.006G013900
[exp]
0 1
AT4G21440 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 10... Potri.011G041600
[exp]
2.82 0.8827
AT2G35390 Phosphoribosyltransferase fami... Potri.003G088400
[exp]
3.00 0.8593
AT2G44130 Galactose oxidase/kelch repeat... Potri.003G218400
[exp]
3.46 0.8585
AT1G72510 Protein of unknown function (D... Potri.006G219100
[exp]
3.60 0.8973
AT2G04240 XERICO RING/U-box superfamily protein... Potri.014G170400
[exp]
10.81 0.8415
AT2G24100 ASG1 ALTERED SEED GERMINATION 1, un... Potri.001G041800
[exp]
10.95 0.8478
AT1G45249 bZIP AtABF2, ATAREB1... ABSCISIC ACID RESPONSIVE ELEME... Potri.002G125400
[exp]
12.32 0.8155 ABF2.2
AT4G17790 SNARE associated Golgi protein... Potri.001G140200
[exp]
16.12 0.8116
AT4G18170 WRKY ATWRKY28, WRKY2... WRKY DNA-binding protein 28 (.... Potri.005G203200
[exp]
16.43 0.8327
AT3G22550 Protein of unknown function (D... Potri.002G050800
[exp]
16.49 0.7799

Potri.006G013900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.