Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53420 272 / 4e-79 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 270 / 4e-78 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 262 / 3e-75 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 258 / 6e-74 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 239 / 4e-67 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29750 230 / 4e-64 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G56130 222 / 3e-61 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 217 / 1e-59 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 215 / 7e-59 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 212 / 1e-57 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G014232 [exp] 785 / 0 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G092700 [exp] 771 / 0 AT1G53440 503 / 4e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G061500 [exp] 432 / 1e-138 AT1G53440 577 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G012150 [exp] 424 / 2e-135 AT1G53440 574 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011400 [exp] 416 / 1e-132 AT1G53440 507 / 2e-163 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011601 [exp] 404 / 1e-127 AT1G53440 571 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011200 [exp] 388 / 9e-122 AT1G53440 600 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155600 [exp] 386 / 5e-121 AT1G53440 596 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155800 [exp] 348 / 3e-114 AT1G53430 181 / 2e-50 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005550 [exp] 270 / 7e-78 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 256 / 9e-73 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 253 / 3e-72 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10038153 [exp] 253 / 7e-72 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 242 / 1e-68 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031374 [exp] 241 / 2e-67 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031199 [exp] 211 / 2e-57 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 210 / 2e-57 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 147 / 2e-36 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10023677 [exp] 142 / 1e-34 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G014066.1 pacid=42768220 polypeptide=Potri.006G014066.1.p locus=Potri.006G014066 ID=Potri.006G014066.1.v4.1 annot-version=v4.1 ATGGATTCTGAATTGTCAGTAGTACTAGTTATTAGACTTCTCTTCTTCAACTTTCTTCTTCTCTGGCAACTTGGCAACGGGGCTAAAGTCAATAATGGCA CTACAAACATTAAAGCTAATGGTGATAACACTACAATTGGTGCCCTTACAGATGCTGAAGCACGTACTCTTCGACTCCTTTTCAAGAGTTTGCAGTCCAG GAACACAACGCAGTTCCCCCTATCGTATCCGATTTGTTCTACCAACATGGATGCCGAGATTCGATGTTCTTGTGACAACACCAAAAACCGATCAGCTTGT TGGGTCACTGCAATAAACCTGGCAAGCAAAATGTTGGATGGGTTAATTCACTCTTCAATAAGTCTCTTTAAGAACTTGAGAGTACTGGACCTTTCAAGCA ATTTCTTAACCGGGTCTATACCTCCTAGCCTGACAACGTTGCAGAGTCTGAGAATTCTCAATCTTGCAGACAACAATCTTGATGGTACCATCCCTCTGAA TCTGTCAGGTTTACAATCGCTTCGCTATTTGGATCTTTCAAGGAATAAATTGACTGGACCTATACCAGACAGCATAAGTGATTGTCAATACTTGAACATC ATCATTCTCCGCCTAAACTTCCTCAATGGTACTATACCTGAAGCTTTGGGCACACTATCTTCCCTAAATATTCTGGATCTTTACAGTAACTCGTTATCAG GACATATTCCCGTTGAATTAGGAGAACTGACTGTTCTTCAGTTTTTGAATCTGGATGACAATAATCTTGATGGCGAACTTCCGGAGGAGCTTGGGAATTT GGTCGATCTTCAACACCTCTACTTGACAGCAAACAAATTTACTGGGAGGATCCCTGAGACTTTTGACAAACTTATCCATCTGGAAACCTTTGCAGTAGGT GGAAACTATTTGTCTGGTCAGATGCCTAGTTATATTGGAAATTGGGTCAACCTCACTAAACTGATTCTTATAGGAAATAATTTTGAAGGGAATCTGCCTG CAGAAACTTTTAGTCTGCCAAAATTACAGAGATTGTTGGTCAGTGACGTAAGTAATCCTGGAATATCTTTCCCAAAACGTGAAGTAATACCTGAAAGTTT GATTTACTTGGTTCTGAGAAATTGCAAAATTAATGGTTCAATACCCGAATACATTGGCAAGTGGCCTGAATTATCATACCTTGATTTGAGCTTCAACAAC TTAAGTGGTGGAGTTCCAGAATCATTTCAGAAACTGAATAAGTTATTTTTAACAAGCAACGAACTTACTAAGCTTCCTTCCTGGATCACTAAGAAGCCGA AGCCATCTTCCTATCCTAAAGCAGATCTCTCATATAATAACTTCAATGTGAAATGTACAAATGAAAAATGCTCTGGATTGGCAGCTGTAAACATACTCCC GACTAGGTCATTTATTGATAACATGAAGACGGAAAAATGCTATCGAAAGCATAATTCCTTGTTTATAAATTGTGGTGGTGAGGAGCTTAACGTGGGAAAG GATCATTATCACAACGACACCTCAACATCAAGTTTTAATCTCAGTCCATCTGACGATTGGGCTTATAGCTTTTCTGGGGACTACCTCTGGGCAACAGTCA ATGCCAGTACTTTAGTAAGGAACTCAACATGTAAAGATTGTACTCCTGAGACAAAGATAGATAATGATTTTCGCCTTGCTCCGGTTTCTCTAATGTATTA TGGGCTCTGCTTACATAAAGGCAAGTACATTGTGACCCTTCATTTTTCTGAAACATTGTATTCAAAGGGTGAAGATCATAGCATAACAGGGAAACGGGTG TTTGATGTTTATATTCAGGGACGGTTGGTGAAGAAAGATCTCAACATAAAGGAAATCCCTGAACTACAAAATGAAGTAAGAAAGCTAAAATTCCCAGCTA AAATAAATGAAGGTTCGTTGGAGATCAAGCTTTTCTGGGCAGGCAAAGGATCTCTGTACAATCCACCTGGTATCAATGGACCTCTCATAGAAGCTATTTC CGTCACTCGTGTTTCCAGAAAACTACATCGTTGGGAAATCGCGTTGATTACAATAGGCTGTCTTTTGTTTCTGATGTTGTTGTTGGCGTTCTCTTTGAGA ATGGGCTGGATAGGAGGCAGAAAATTGCGCAGTGGGCACTAA
AA sequence Show only first row Show all	>Potri.006G014066.1 pacid=42768220 polypeptide=Potri.006G014066.1.p locus=Potri.006G014066 ID=Potri.006G014066.1.v4.1 annot-version=v4.1 MDSELSVVLVIRLLFFNFLLLWQLGNGAKVNNGTTNIKANGDNTTIGALTDAEARTLRLLFKSLQSRNTTQFPLSYPICSTNMDAEIRCSCDNTKNRSAC WVTAINLASKMLDGLIHSSISLFKNLRVLDLSSNFLTGSIPPSLTTLQSLRILNLADNNLDGTIPLNLSGLQSLRYLDLSRNKLTGPIPDSISDCQYLNI IILRLNFLNGTIPEALGTLSSLNILDLYSNSLSGHIPVELGELTVLQFLNLDDNNLDGELPEELGNLVDLQHLYLTANKFTGRIPETFDKLIHLETFAVG GNYLSGQMPSYIGNWVNLTKLILIGNNFEGNLPAETFSLPKLQRLLVSDVSNPGISFPKREVIPESLIYLVLRNCKINGSIPEYIGKWPELSYLDLSFNN LSGGVPESFQKLNKLFLTSNELTKLPSWITKKPKPSSYPKADLSYNNFNVKCTNEKCSGLAAVNILPTRSFIDNMKTEKCYRKHNSLFINCGGEELNVGK DHYHNDTSTSSFNLSPSDDWAYSFSGDYLWATVNASTLVRNSTCKDCTPETKIDNDFRLAPVSLMYYGLCLHKGKYIVTLHFSETLYSKGEDHSITGKRV FDVYIQGRLVKKDLNIKEIPELQNEVRKLKFPAKINEGSLEIKLFWAGKGSLYNPPGINGPLIEAISVTRVSRKLHRWEIALITIGCLLFLMLLLAFSLR MGWIGGRKLRSGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53420			Leucine-rich repeat transmembr...		Potri.006G014066 [exp]	0	1
AT4G18490			unknown protein		Potri.011G063500 [exp]	3.31	0.9622
AT5G15250		FTSH6, ATFTSH6	FTSH protease 6 (.1.2)		Potri.017G084000 [exp]	7.61	0.9566
					Potri.004G095550 [exp]	9.00	0.9547
AT1G76770			HSP20-like chaperones superfam...		Potri.002G067700 [exp]	9.05	0.9173
AT2G29500			HSP20-like chaperones superfam...		Potri.009G148000 [exp]	11.13	0.9541
AT2G29500			HSP20-like chaperones superfam...		Potri.009G049900 [exp]	12.64	0.9524
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.010G195700 [exp]	13.63	0.9522	Pt-HSP18.4
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Potri.006G223900 [exp]	14.49	0.9515	HSP17.11
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Potri.010G147050 [exp]	19.28	0.9426
AT4G17020			transcription factor-related (...		Potri.004G041600 [exp]	19.97	0.9342

Compare expression of checked genes

Potri.006G014066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.