Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53440 505 / 3e-161 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 491 / 6e-157 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 489 / 8e-156 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29750 480 / 3e-152 RKF1 receptor-like kinase in flowers 1 (.1.2) AT3G14840 464 / 1e-145 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29730 459 / 1e-144 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 455 / 6e-142 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 441 / 3e-137 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29720 426 / 2e-131 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 415 / 3e-127 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092700 [exp] 1177 / 0 AT1G53440 503 / 4e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G014066 [exp] 826 / 0 AT1G53420 272 / 3e-79 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011200 [exp] 711 / 0 AT1G53440 600 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155600 [exp] 706 / 0 AT1G53440 596 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G061500 [exp] 705 / 0 AT1G53440 577 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011601 [exp] 704 / 0 AT1G53440 571 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G012150 [exp] 700 / 0 AT1G53440 574 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155150 [exp] 650 / 0 AT1G53440 543 / 1e-176 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011400 [exp] 645 / 0 AT1G53440 507 / 2e-163 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005550 [exp] 506 / 8e-162 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 481 / 9e-151 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10015239 [exp] 457 / 1e-143 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10041937 [exp] 442 / 2e-138 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 443 / 1e-137 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 414 / 8e-127 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 412 / 1e-125 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 377 / 1e-114 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 327 / 2e-97 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042460 [exp] 197 / 3e-55 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G014232.1 pacid=42768926 polypeptide=Potri.006G014232.1.p locus=Potri.006G014232 ID=Potri.006G014232.1.v4.1 annot-version=v4.1 ATGCACCCTCACCAAGCAAAGCACAGCAGAAGTACTACTGCTATGTCGAAACTAATGGCTTCTGAATTGTCAGTAATACTCATTAGTAGACTTCTTCTCT TCGTCTCTCTTCTTCTATGGCAACTTGGCACTGGCACTACTTTCAATATTGGAACGAAAGCTGCTGCTGATAATGGCGATAACAGTACTACAAATAATTG TATCCTTACAGGTTCTGAAGAAAATGCTCTTCGACTCCTTTTCAGCAGTTTGCAGACCACTGGAGAGGGTGCGAAGATTAAATGTTCCTGTCATAACAGC AATGAAGCTTGTTCCATCACTGAAATAAATTTGGCAGGCAAAAATTTAGACGGACAGATTTCCTCTTCAATAGGTGACTTTGAGAACTTGAAAATACTTA ATCTATCCAACAATCTGCTTACTGGTGTGATTCCTTCCTCGCTAGGGAAATTACAGCGTCTCGAAAAATTGGACCTTGCAAACAATCTATTGACCGGGTC GATACCTGATAACCTGACACCGTTGCAGAGTCTGAAATCCCTGAACCTTACAAGCAATGCGTTGACCGGTTCCATTCCTGCGAGCCTGACAAATTTACGT AATCTGACAGTACTCATGCTTTCCGACAACAATCTTGATGGTGAAATCCCTCAGAACCTGACTGGTTTACAATCGCTTGGCTATTTGTATCTTCAAAGCA ATAAATTGACAGGCCGTATACCAGACAGCATAAGTGATTGCAAAAAATTGGTAGAGATCTCTCTTCGGTTCAACAGCCTGAGTGGTACTATACCCAGAAC TTTGGGCACACTCTCCAACCTAACAATTCTGGATCTTTATAGTAACTCGTTGTCAGGCCATATTCCTGTCGAACTGGGAAACCTGTCTTCCCTCCATACT TTGTATCTGGATGACAATGATCTCGAGGGAAACCTTCCTAAGGAACTTGAGAATTTGGTCAAACTTCAATTCCTCTACTTGTCATCCAACAAGTTTAACG GAAGTATTCCTGAGACATATGCAAAACTTACCAAAATGAAAGACTTTGTAGTTGGTGGAAACTATTTGTCTGGTAAGATACCTAATTATTTTGGAAAATG GGGCAGTCTCACCAAACTGGATCTTATAGGAAATAATTTTGAAGGGAATCTGCCTGCGGAAACTTTTAGTCTGCAAAAATTGAAGTTCTTGTTGGTCAGT GACGTAAGTAATCCTGGAATATCTTTCCCAAAACATGAAGTAATATCTGGAAGTTTGACTAAAGTGGTTCTGAGGAATTGCGATATTAGTGGCCAAATAC CTGAATACATTGGCCGATGGCCTCAGTTAATATATCTTGACCTGAGTTTCAACAACTTAACTGGTGGCATTCCCGATTCATTTCAGAACATTAGTTACAA GTTATTTCTAACAAACAACTTGCTTGATGAGCTTCCGTCCTGGATCACTAGCAAGCAAAATCGATCTTCCTATCCTGAAACGTATCTTTCATACAATAAC TTCAAAGGGAACTGTACAAATTCAACATGCTGGGGACCGGAACAAGTACACATTCATCCGACTAGATCTTTCATAGATAAGATGATGCAGAAGGAAACAT GTCGTCGAAAGCACAAATCCTTGTTTATAAATTGTGGTGGTGAGGAGGTAACCGTGGGAAAGGCTCATTATCATAACGATACCTCAACATCAAATTTTTT TCAAAGTCCAAACGACGATTGGGCTTATAGCTATTCTGGAGACTACTTTTGGGCCAGAATCAATGACAGTACTTTAGTAAGAAACTCGACATGTGAAGTT TCCAGTCCCGAGGCAAAATTAGATAACAATTTCCGCCTTGCTCCTGTCTCTCTAACGTATTATGGGCTTTGCTTGAGTAATGGCAAGTACCATGTGACAC TTCATTTTGCTGAAACATTATACTCGAAGGGAGAAGATAACAGCAGAGTAGGGAAACGTGTGTTCGATGTGTATATTCAGAAAGAGAGAGTGGAGAAAGA CCTCAACATAAAGGAAGCTCTTGGAGGACAAAATGAAGAACTAAAGCGACAATACACCACCAAAATACGTGATGGTTCGTTGGAGATCCATTTCTTCTGG ACTGGCAAAGGATCTCTGTACAATCCACCTGCTATCAATGGACCTCTCATATCAGCTATTTCAGTCACCCGTGTTCCCAGAAAACTACGTCCTTGGGAAA TTGCGGTGATTGCAGTAAGCTGTATTTTATTTCTGCTGCTGCTGCTGGCTTTCATGTGGAGAATGGGCTGGATAGGAGACAGAGAATTACGGGAAACAAA ACTGAAGATCGGAGGAAAACCTTTCACCCTTAAACAGATCGTTGATGCAACTGGAAATTTTAGCCCCGAGAACGAGCTTGGTAGGGGGCGTTCTGGGATA GTATACAAGGCTGACCTGCCAAATCTGACAGTAGCAGTGAAGAAGCTAGACCCAAAGTCAAAAGCAGTTGATGAAATAGCAAGCGAAGTTTATGCTAAGA AGGCCTTGGACTTGAAACATGACAACGTTGTTACATTGCTTGCTAGTTATTCCAAAAGGCACCTGCATTTGCTCATCTACGAATACATGAAACATGGCTC ACTTGGACAAGTTTTATTTGGTACAAATTCTACCGAGCAACTCGATTCGCCGGAAAGATCTACAATCTGCCAGGGTATAGCGAAGGCTTTGAAGAATCTA CTTAGATGGAATCCACAAACAATTCAAAAAAGCACAGATTCAAATCCTAAAGTGCAACTTGATTGGCAAAAAAGATTTAATATCTGCAGGGGAATAGCAA AGGGTTTGAAGTATCTACATGAAAGGAAGCCACAAATAATTCACCGAAACATTAAATCCACTAATATTCTGCTTGATGCAAGTTTGAATCCCAAAATATC AGATTTTGGATTGGCAAAGCTTTACGAGGAGGGAAATCCATACATTGCAGTTGGAGCAGGAAAACAACTTTCATACATGGCACCAGAATATGCAACCCGA AGAGCCATGACTGTCAAGGTCGATGTCTTCAGTTTTGGGATCCTTCTTCTTGAAATCGTTAGTGGGAAAAATAATGCAGATTCTACTGGGGACGAAAACT CTGTTTTTCTTCTAGATACGGCCAGTAAGTTGCATGCGAAGCAAGAACTTGAACAGCTAGTTTACACAAGGTTGGACACTAGTAGTGAAAGCGGACAAGC AAGCATTGCCTTGAACCTGGCAATAATGTGCACCGATCAATCACCTTCTCTCAGGCCTACAATGTCTCAGGTTGTGGCTGTACTTGAACGTTCAAAAACC ATTGAGGATATTTCTAAAGAGATCAATACCTCGGCATGA
AA sequence Show only first row Show all	>Potri.006G014232.1 pacid=42768926 polypeptide=Potri.006G014232.1.p locus=Potri.006G014232 ID=Potri.006G014232.1.v4.1 annot-version=v4.1 MHPHQAKHSRSTTAMSKLMASELSVILISRLLLFVSLLLWQLGTGTTFNIGTKAAADNGDNSTTNNCILTGSEENALRLLFSSLQTTGEGAKIKCSCHNS NEACSITEINLAGKNLDGQISSSIGDFENLKILNLSNNLLTGVIPSSLGKLQRLEKLDLANNLLTGSIPDNLTPLQSLKSLNLTSNALTGSIPASLTNLR NLTVLMLSDNNLDGEIPQNLTGLQSLGYLYLQSNKLTGRIPDSISDCKKLVEISLRFNSLSGTIPRTLGTLSNLTILDLYSNSLSGHIPVELGNLSSLHT LYLDDNDLEGNLPKELENLVKLQFLYLSSNKFNGSIPETYAKLTKMKDFVVGGNYLSGKIPNYFGKWGSLTKLDLIGNNFEGNLPAETFSLQKLKFLLVS DVSNPGISFPKHEVISGSLTKVVLRNCDISGQIPEYIGRWPQLIYLDLSFNNLTGGIPDSFQNISYKLFLTNNLLDELPSWITSKQNRSSYPETYLSYNN FKGNCTNSTCWGPEQVHIHPTRSFIDKMMQKETCRRKHKSLFINCGGEEVTVGKAHYHNDTSTSNFFQSPNDDWAYSYSGDYFWARINDSTLVRNSTCEV SSPEAKLDNNFRLAPVSLTYYGLCLSNGKYHVTLHFAETLYSKGEDNSRVGKRVFDVYIQKERVEKDLNIKEALGGQNEELKRQYTTKIRDGSLEIHFFW TGKGSLYNPPAINGPLISAISVTRVPRKLRPWEIAVIAVSCILFLLLLLAFMWRMGWIGDRELRETKLKIGGKPFTLKQIVDATGNFSPENELGRGRSGI VYKADLPNLTVAVKKLDPKSKAVDEIASEVYAKKALDLKHDNVVTLLASYSKRHLHLLIYEYMKHGSLGQVLFGTNSTEQLDSPERSTICQGIAKALKNL LRWNPQTIQKSTDSNPKVQLDWQKRFNICRGIAKGLKYLHERKPQIIHRNIKSTNILLDASLNPKISDFGLAKLYEEGNPYIAVGAGKQLSYMAPEYATR RAMTVKVDVFSFGILLLEIVSGKNNADSTGDENSVFLLDTASKLHAKQELEQLVYTRLDTSSESGQASIALNLAIMCTDQSPSLRPTMSQVVAVLERSKT IEDISKEINTSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53440			Leucine-rich repeat transmembr...		Potri.006G014232 [exp]	0	1
AT4G31980			unknown protein		Potri.003G208600 [exp]	1.00	0.9361
AT3G18670			Ankyrin repeat family protein ...		Potri.015G119800 [exp]	2.00	0.9209
AT3G12970			unknown protein		Potri.005G098300 [exp]	2.00	0.8759
AT3G14470			NB-ARC domain-containing disea...		Potri.015G121800 [exp]	2.44	0.9111	FRGA-A30.27
AT4G31980			unknown protein		Potri.003G207802 [exp]	6.48	0.8624
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Potri.007G088700 [exp]	7.21	0.8326
AT5G08350			GRAM domain-containing protein...		Potri.005G088200 [exp]	9.16	0.8567
AT4G31980			unknown protein		Potri.003G208750 [exp]	10.72	0.8742
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162600 [exp]	11.48	0.8356
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G011200 [exp]	12.00	0.8469

Compare expression of checked genes

Potri.006G014232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.