Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47540 569 / 0 Mo25 family protein (.1) AT4G17270 532 / 0 Mo25 family protein (.1) AT2G03410 436 / 3e-154 Mo25 family protein (.1) AT5G18940 261 / 2e-85 Mo25 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G011100 [exp] 620 / 0 AT5G47540 589 / 0.0 Mo25 family protein (.1) Potri.010G155400 [exp] 619 / 0 AT5G47540 588 / 0.0 Mo25 family protein (.1) Potri.002G222800 [exp] 459 / 3e-163 AT5G47540 458 / 1e-162 Mo25 family protein (.1) Potri.014G162100 [exp] 461 / 6e-163 AT5G47540 461 / 1e-162 Mo25 family protein (.1) Potri.019G057100 [exp] 446 / 8e-158 AT5G47540 411 / 5e-144 Mo25 family protein (.1) Potri.010G155300 [exp] 361 / 4e-126 AT5G47540 348 / 6e-121 Mo25 family protein (.1) Potri.016G011300 [exp] 267 / 2e-90 AT5G47540 262 / 1e-88 Mo25 family protein (.1) Potri.010G028700 [exp] 254 / 9e-83 AT5G18940 469 / 5e-167 Mo25 family protein (.1.2) Potri.008G198900 [exp] 244 / 1e-78 AT5G18940 436 / 5e-154 Mo25 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010497 [exp] 572 / 0 AT5G47540 594 / 0.0 Mo25 family protein (.1) Lus10027342 [exp] 572 / 0 AT5G47540 592 / 0.0 Mo25 family protein (.1) Lus10017565 [exp] 571 / 0 AT5G47540 593 / 0.0 Mo25 family protein (.1) Lus10039045 [exp] 523 / 0 AT5G47540 517 / 0.0 Mo25 family protein (.1) Lus10041405 [exp] 431 / 2e-151 AT5G47540 446 / 3e-157 Mo25 family protein (.1) Lus10036523 [exp] 426 / 1e-148 AT5G47540 446 / 1e-156 Mo25 family protein (.1) Lus10034014 [exp] 238 / 2e-76 AT5G18940 522 / 0.0 Mo25 family protein (.1.2) Lus10012762 [exp] 225 / 1e-70 AT5G18940 512 / 0.0 Mo25 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08569 [poplar] [flax] Mo25 Mo25-like
Representative CDS sequence Show only first row Show all	>Potri.006G014800.1 pacid=42767649 polypeptide=Potri.006G014801.1.p locus=Potri.006G014800 ID=Potri.006G014800.1.v4.1 annot-version=v4.1 ATGAAGGGACTTTTCAAGTCAAAGCCGAGAACTCCTGTCGATGTTGTTAGACAGACTCGCGATCTGTTAATCTATGTTGATCGGAGTTCATCTTCTTTGT CTGATTCAAAACGAGAAGAGAAGATGGCAGAATTAGCTAAAAATACCAGGGAGTTAAAGTCAATTCTTTATGGAAATAGTGAATCTGAACCAGTGTCAGA AGCGTGTGCACAATTGACTCAGGAGTTCTTCAGAGAGAACACACTTCGTCTTTTGATCATCTGTCTTCCAAAATTGAACTTAGAGACCCGAAAAGATGCC ACTCAGGTTGTTGCAAATCTACAAAGGCAACAAGTTAATTCAAGATTGATTGCATCAGACTACTTGGAGAAAAATACAGATCTTTTAGATATTTTGATAG CAGGTTATGAAAACACAGACATGGCTTTGCACTATGGTGTAATGTTGAAGGAGTGCATCCGTCACCAGAGTGTTGCAAGATATGTCCTGGAATCACCACA CGTGAAGAAATTCTTTGATTATATACAACTTCCAAATTTCGACATTTCTGCAGATGCTGCTGCAACTTTCAAGGAACTCTTGACAAGACATAAATCTACA GTAGCTGAATTTCTTTCTAAAAACTATGACTGGTTCTTTGCCGAATTTAATTCGAAGCTGCTAGAGTCCACCAATTACATTACAAGACGACAATCTATCA AGCTGTTGGGAGATATGTTATTGGATCGCTCTAATGCAGTCGTGATGACGAGATACGTGAGCTCGAGGGATAACTTGAGGATTCTTATGAATCTTCTCAG GGAATCAAGTAAGAGCATCCAGACAGAAGCCTTTCATGTTTTCAAGCTTTTTGTTGCAAACCAAAATAAACCTCCCGACATAGTTAGTATACTTGTTGCA AATAGAAGCAAGCTTCTTCGTTTGTTAGCTGATTTCAAGATAGATAAAGAGGATGAACAATTTGAGGCAGACAAAGCTCAAATTGTGAAAGAAATAGCTG CCCTTGAACCTAGAGAGTAG
AA sequence Show only first row Show all	>Potri.006G014800.1 pacid=42767649 polypeptide=Potri.006G014801.1.p locus=Potri.006G014800 ID=Potri.006G014800.1.v4.1 annot-version=v4.1 MKGLFKSKPRTPVDVVRQTRDLLIYVDRSSSSLSDSKREEKMAELAKNTRELKSILYGNSESEPVSEACAQLTQEFFRENTLRLLIICLPKLNLETRKDA TQVVANLQRQQVNSRLIASDYLEKNTDLLDILIAGYENTDMALHYGVMLKECIRHQSVARYVLESPHVKKFFDYIQLPNFDISADAAATFKELLTRHKST VAEFLSKNYDWFFAEFNSKLLESTNYITRRQSIKLLGDMLLDRSNAVVMTRYVSSRDNLRILMNLLRESSKSIQTEAFHVFKLFVANQNKPPDIVSILVA NRSKLLRLLADFKIDKEDEQFEADKAQIVKEIAALEPRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47540			Mo25 family protein (.1)		Potri.006G014800 [exp]	0	1
AT5G10980			Histone superfamily protein (....		Potri.005G072300 [exp]	6.92	0.7929
AT3G15750			Essential protein Yae1, N-term...		Potri.001G024000 [exp]	7.34	0.8128
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Potri.014G160500 [exp]	12.36	0.7935	Pt-IBR5.1
AT3G16175			Thioesterase superfamily prote...		Potri.003G051900 [exp]	13.19	0.7344
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.009G031100 [exp]	13.63	0.7763	MBD5.2,MBD904
AT3G21865		PEX22	peroxin 22 (.1)		Potri.017G038800 [exp]	16.00	0.7741
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.014G061400 [exp]	22.84	0.7695
AT1G52343			unknown protein		Potri.003G055200 [exp]	28.98	0.7751
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.004G134400 [exp]	32.46	0.7508
AT3G51500			unknown protein		Potri.011G146400 [exp]	32.61	0.7457

Compare expression of checked genes

Potri.006G014800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.