Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16480 787 / 0 ATINT4 inositol transporter 4 (.1) AT2G35740 722 / 0 ATINT3 nositol transporter 3 (.1) AT1G30220 676 / 0 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G43330 357 / 3e-117 ATINT1 inositol transporter 1 (.1) AT2G20780 183 / 7e-51 AtPLT4 Major facilitator superfamily protein (.1) AT2G16130 182 / 1e-50 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G16120 181 / 3e-50 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT4G36670 178 / 2e-49 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT3G18830 177 / 1e-48 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT5G26250 172 / 5e-47 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010600 [exp] 848 / 0 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 811 / 0 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.007G126800 [exp] 363 / 1e-119 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 357 / 3e-117 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G133340 [exp] 266 / 3e-85 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.004G133420 [exp] 232 / 8e-73 AT1G30220 328 / 2e-110 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.013G135200 [exp] 194 / 8e-55 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 191 / 3e-54 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G039100 [exp] 189 / 5e-53 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039050 [exp] 858 / 0 AT4G16480 769 / 0.0 inositol transporter 4 (.1) Lus10010501 [exp] 840 / 0 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10038808 [exp] 833 / 0 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10017561 [exp] 828 / 0 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10010500 [exp] 818 / 0 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10017559 [exp] 747 / 0 AT2G35740 669 / 0.0 nositol transporter 3 (.1) Lus10028118 [exp] 661 / 0 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 660 / 0 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10025565 [exp] 367 / 6e-121 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10027026 [exp] 355 / 1e-116 AT2G43330 769 / 0.0 inositol transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.006G015300.1 pacid=42768192 polypeptide=Potri.006G015300.1.p locus=Potri.006G015300 ID=Potri.006G015300.1.v4.1 annot-version=v4.1 ATGGTGGAAGGAGGTGTTGTGAAAGCAGCGGACAAGACAGAATTCACAGAATGTTGGAAGGTAACATGGAAGACTCCTTATATTATGAGGCTTGCTTTCT CCGCTGGAATTGGAGGTCTTCTTTTCGGCTACGATACAGGGGTTATTTCTGGTGCCTTGCTTTACATTAAAGAGGATTTTGAGGCTGTTGGCAGAAACAC CTTTCTACAGGAATTGATTGTAAGTACTTGTGTTTTAGGAGCAATTTTTGGTGCTGCAATTGGTGGATTTTGCAGTGACAGTTTAGGGAGGAGAAAAACC ATTTTAGTTGCAGATTTTTTGTTCTTCGTCGGTGCAATAGTCATGGCTGTTGCTCCACATCCATGGATTATTATTGTTGGAAGATTTCTAGTTGGCTTAG GAGTTGGAATGGCATCCATGACTGCCCCTCTTTATATATCAGAAGCTTCACCGGCACGAATTCGAGGTGCTCTTGTTAGCATGAATGGCCTGATGATTAC TGGGGGACAGTTCTTGGCTTACCTTATCAATCTGGCTTTCACTAGGGCTCCTGGAACTTGGCGTTGGATGCTTGGGGTGGCCGGAACCCCTGCTCTAATT CAATTTGTGCTGATGCTGTCGCTTCCTGAGTCTCCTAGATGGCTTTACCGAGCGAACAAGGTTGATGAGGCAAGAACTATTCTCGCGAGAATATATCCTC CTGATGAAGTTGAGAATGAGATAAATGCCTTGAAAGAATCCGTTCAAAAAGAAAAGGAAATTGAAGATTCTATTGGAACAACCACACTCTCTAAAGTAAA GGGTGCTTTCAAAGACCCTGTTGTCCGCAGGGGACTCTACGCAGGCATTACAGTTCAAGTTGCTCAGCAATTTGTGGGCATCAATACTGTCATGTATTAT TCCCCGACCATAGTTCAGTTTGCTGGATTTGCTTCAAAATCAGTGGCCTTAGCCCTTTCTCTGGTTACTTCTGGCCTCAATGCTCTCGGCTCCATCATCA GTATGCTTTTCGTTGATAGATATGGGAGGAGAAAGTTGATGATTATCTCAATGTTCGGCATCATTACTTGCCTTGTGGTTCTCGCGATCGTGTTTCAACA AGCTTCCATCCATTCTCCGGGGATTAGTCAAGTAGAATCTGCACATTTTGGTGCCAACTCTACATGTCCAAGTTATTTCTCTAATGTAAATAAAAATAAA TGGGACTGCATGAGTTGCTTGAAAGCACAATGTTCTTTCTGTTCCAATGCTGAAAACCAATACCATCCTGGAGCCTGCCTAGTTTCAAAAAAGGATTTAA AAGGTTCATGTCTTGCGCAAAAACGCGTTTGGTTTGAGGAAGGCTGCCCAAGCAAAATTGGATTCTTTGCGGTTATACTTCTCGGCTTGTACATTATTTC CTACTCGCCTGGAATGGGAACTGCGCCGTGGATCGTAAACTCGGAGATATATCCACTGAGATATAGGGGTGTAGGTGGAGGAATAGCAGCAGTGGCGAAC TGGACTTCAAATCTGATTGTGAGTCTAACCTTCTTAACACTCACTGAAACCCTCACCGTTGCCGGAGCCTTCCTGCTATTCGCTGGAATTTCTTTCCTTG CACTTATCGCCATCTTCTTCTTGGTACCTGAAACCAAAGGTCTACAATTCGAGGAGGTTGAGAAGATGCTAAAGTCTGGGTTCAGACCAAAACTATTCGG TAAAAACACAAAAGGAGCCGATTCTGTCTGA
AA sequence Show only first row Show all	>Potri.006G015300.1 pacid=42768192 polypeptide=Potri.006G015300.1.p locus=Potri.006G015300 ID=Potri.006G015300.1.v4.1 annot-version=v4.1 MVEGGVVKAADKTEFTECWKVTWKTPYIMRLAFSAGIGGLLFGYDTGVISGALLYIKEDFEAVGRNTFLQELIVSTCVLGAIFGAAIGGFCSDSLGRRKT ILVADFLFFVGAIVMAVAPHPWIIIVGRFLVGLGVGMASMTAPLYISEASPARIRGALVSMNGLMITGGQFLAYLINLAFTRAPGTWRWMLGVAGTPALI QFVLMLSLPESPRWLYRANKVDEARTILARIYPPDEVENEINALKESVQKEKEIEDSIGTTTLSKVKGAFKDPVVRRGLYAGITVQVAQQFVGINTVMYY SPTIVQFAGFASKSVALALSLVTSGLNALGSIISMLFVDRYGRRKLMIISMFGIITCLVVLAIVFQQASIHSPGISQVESAHFGANSTCPSYFSNVNKNK WDCMSCLKAQCSFCSNAENQYHPGACLVSKKDLKGSCLAQKRVWFEEGCPSKIGFFAVILLGLYIISYSPGMGTAPWIVNSEIYPLRYRGVGGGIAAVAN WTSNLIVSLTFLTLTETLTVAGAFLLFAGISFLALIAIFFLVPETKGLQFEEVEKMLKSGFRPKLFGKNTKGADSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16480		ATINT4	inositol transporter 4 (.1)		Potri.006G015300 [exp]	0	1
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.009G073500 [exp]	1.41	0.8743
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096400 [exp]	5.65	0.8341
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.001G189800 [exp]	10.48	0.8332
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.011G156200 [exp]	16.30	0.8330
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.017G079100 [exp]	17.32	0.8196
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.016G043100 [exp]	19.89	0.8083
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Potri.003G126100 [exp]	27.34	0.7983
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.006G014400 [exp]	28.00	0.8156
AT5G26110			Protein kinase superfamily pro...		Potri.005G212800 [exp]	36.48	0.8189
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.001G471200 [exp]	45.39	0.8220	UBC.6

Compare expression of checked genes

Potri.006G015300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.