Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22660 59 / 2e-09 F-box family protein with a domain of unknown function (DUF295) (.1) AT3G22345 53 / 2e-07 unknown protein AT2G45940 50 / 2e-06 Protein of unknown function (DUF295) (.1) AT5G46130 50 / 2e-06 Protein of unknown function (DUF295) (.1) AT5G67040 47 / 3e-06 Protein of unknown function (DUF295) (.1) AT5G46140 48 / 5e-06 Protein of unknown function (DUF295) (.1) AT4G22170 48 / 6e-06 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G22060 47 / 1e-05 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G14260 47 / 1e-05 Protein of unknown function (DUF295) (.1) AT5G66830 47 / 2e-05 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134900 [exp] 68 / 2e-12 AT4G17565 99 / 8e-23 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G014500 [exp] 66 / 1e-11 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.003G127700 [exp] 57 / 1e-08 AT5G55150 56 / 2e-08 Protein of unknown function (DUF295) (.1) Potri.002G015700 [exp] 54 / 8e-08 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1) Potri.012G106750 [exp] 52 / 4e-07 AT1G57790 57 / 7e-09 F-box family protein (.1) Potri.009G140000 [exp] 47 / 1e-05 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G179685 [exp] 46 / 3e-05 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.016G079300 [exp] 45 / 4e-05 AT1G57790 313 / 5e-105 F-box family protein (.1) Potri.005G105000 [exp] 45 / 6e-05 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013995 [exp] 59 / 2e-09 AT2G17030 52 / 6e-07 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10029350 [exp] 50 / 8e-07 AT4G22060 45 / 3e-05 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10008665 [exp] 50 / 3e-06 AT5G55150 63 / 9e-11 Protein of unknown function (DUF295) (.1) Lus10022706 [exp] 48 / 1e-05 AT1G57790 293 / 3e-97 F-box family protein (.1) Lus10000289 [exp] 46 / 1e-05 ND / Lus10016196 [exp] 45 / 4e-05 AT5G20720 315 / 7e-108 CHLOROPLAST CHAPERONIN 10, chaperonin 20 (.1.2.3) Lus10023984 [exp] 45 / 0.0001 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10029943 [exp] 45 / 0.0001 AT1G57790 81 / 4e-16 F-box family protein (.1) Lus10025100 [exp] 44 / 0.0002 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [poplar] [flax] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Potri.006G015601.1 pacid=42770664 polypeptide=Potri.006G015601.1.p locus=Potri.006G015601 ID=Potri.006G015601.1.v4.1 annot-version=v4.1 ATGGAGATCTTGAAGGATGGACAAAGAGACTGGACTCAGGTTCCTGCCGATATTCTAGAGTACATAGCAAGCAAGGTAAGTGTGGCTGGCTATCATCGAT TTTTGTTGTTTTGCACTGCATGGAGACGCACAACATCAATGAGACCTCCTTTTTCTCATCTTCCATGGTTAATGCTCTCCAATGATAGAAATAAGAAAAC TCGTGGATTTTTTTGTATTCATGATTCAAAATTCTACCAAATCCCATTACCAAGAGTGGTGCGTCGTAGTTGGTGTGCTAGATCATCTTATGGTTGGTTT ATAATGGCTCATAAAACTCGAGGAGATTTCTTGTTTAATCCTTTTTCTGGTGTTAGGATTCCATTACCAACCCATTATAACCAACCTTACTCTTTTGTAC GACCTGCCTCTAATCCGTATTTTATGACTAAAGCTATCCTATCTTCAGAACCCACGCCAGAGAATATTGCTGCCGGTCATTGCTTGGTTGCTGCGCTTTT TGAGGTAGATAGTTTAGGTATTTGTCGACCAGGAGACCACGCATGGACCTGCTTTACGATTAGGTCCCTTATGGCGAGGGCGAGGGCCAGGAAGAGGAGG AGGAGGAGGAGGAAGGCGAGGGTGATGATCAAGAAGAGGGAGAGGGAGAGGAAGAGAGGAGGAGGAGGAGGAGGAGGAAGGCGAGGGGCAAGGGATGGTA GTATTGCATGGAGGAGATTAGACACATTACCTTTGAACCTAAAGAAGAAAGAGAGAGGGCGTTGTGATTTCAGGTATTTAGTAGAATCTAATAATGGTGA GCTTTTAATGGTTGTAAGAGTAAGGGATCATGGATTTACCATACAGTTCATAGTTTTTAAGCTTGATGATGAAACAAGTGATCCTGCTAAATGGGTTAGG CTGGAAAACATAGGCAATCAGATTATATTCCTGGGAAGAAATCACACCAAATGTGTTCCTGCCATTGATTTTCCAGGCTTTGAAGGGAACTGTGTCTATT ACTCATGTGACCTATGGAACCATTTTCGTGTGCTTCCTATGGATCAACGTGACTATGCAGACATGGGAGTATACGGTTTAGGAAGAAGAGGTAAAGAGGA GTTTTTCCCGGAAAATTATGGAGCCTTCATGCCGAATTCAGAGCATTCATTCAAGTATCCACCTATATGGATTACACCAAATCCATGGTAA
AA sequence Show only first row Show all	>Potri.006G015601.1 pacid=42770664 polypeptide=Potri.006G015601.1.p locus=Potri.006G015601 ID=Potri.006G015601.1.v4.1 annot-version=v4.1 MEILKDGQRDWTQVPADILEYIASKVSVAGYHRFLLFCTAWRRTTSMRPPFSHLPWLMLSNDRNKKTRGFFCIHDSKFYQIPLPRVVRRSWCARSSYGWF IMAHKTRGDFLFNPFSGVRIPLPTHYNQPYSFVRPASNPYFMTKAILSSEPTPENIAAGHCLVAALFEVDSLGICRPGDHAWTCFTIRSLMARARARKRR RRRRKARVMIKKRERERKRGGGGGGGRRGARDGSIAWRRLDTLPLNLKKKERGRCDFRYLVESNNGELLMVVRVRDHGFTIQFIVFKLDDETSDPAKWVR LENIGNQIIFLGRNHTKCVPAIDFPGFEGNCVYYSCDLWNHFRVLPMDQRDYADMGVYGLGRRGKEEFFPENYGAFMPNSEHSFKYPPIWITPNPW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22660			F-box family protein with a do...		Potri.006G015601 [exp]	0	1
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.013G072800 [exp]	1.73	0.8351
					Potri.017G152701 [exp]	7.74	0.8108
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.011G168900 [exp]	21.00	0.7628
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.002G263600 [exp]	21.74	0.7475
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.004G029100 [exp]	22.58	0.7806
AT5G60800			Heavy metal transport/detoxifi...		Potri.009G007600 [exp]	24.24	0.7471
					Potri.019G057625 [exp]	26.98	0.7561
AT1G23710			Protein of unknown function (D...		Potri.012G081000 [exp]	33.04	0.7311
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Potri.004G160600 [exp]	36.98	0.6869
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Potri.002G113900 [exp]	37.22	0.6765

Compare expression of checked genes

Potri.006G015601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.