Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07810 446 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 396 / 5e-135 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 369 / 6e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 341 / 5e-113 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 243 / 2e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 184 / 2e-53 XF41, ATRBP1 RNA-binding protein 1 (.1) AT1G17640 178 / 3e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 162 / 3e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 158 / 3e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G36960 142 / 7e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010200 [exp] 746 / 0 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 576 / 0 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 560 / 0 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 552 / 0 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 551 / 0 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G170400 [exp] 264 / 3e-83 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 258 / 8e-81 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 253 / 2e-79 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 244 / 4e-76 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017555 [exp] 566 / 0 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 566 / 0 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 556 / 0 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 543 / 0 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 521 / 0 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 520 / 0 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 512 / 2e-179 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 410 / 3e-139 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 343 / 2e-115 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 250 / 2e-78 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.006G015700.8 pacid=42769146 polypeptide=Potri.006G015700.8.p locus=Potri.006G015700 ID=Potri.006G015700.8.v4.1 annot-version=v4.1 ATGGAAATGGAGCTTGGAAAGTTGTTCATTGGTGGGATTTCATGGGACACGAACGAAGACCGTCTTAAGGAGTATTTCCGGGCTTTTGGGGAAGTTTTAG AAGCTGTCATAATGAAGGATCGGGCCACGGGTCGTGCTCGAGGATTTGGTTTTGTTGTTTTCGCAGACCCTGCTGTTGCTGAGAGAGTTGTGATGGAAAA GCACCTTATAGATGGTAGAAATGTTGAGGCAAAGAAGGCAGTTCCTAGAGAGGATCAGAACACCCTGAACAAAAACAGTAGCAGCGTTAATGGTTCACCT GGCCCTGCCCGAACAAAGAAGATATTTGTAGGAGGTTTAGCATCTACAGTTACAGAGAGTGACTTTAGGAAGTACTTTGATCAGTTTGGGGTGATTACAG ATGTGGTGGTCATGTATGATCACAACACTCAAAGGCCAAGAGGTTTTGGATTCATCACCTACGATTCAGAGGAAGCAGTGGATAGAGTATTGCACAAAAC CTTTCATGAACTCAACGGTAAAATGGTTGAGGTCAAGCGGGCTGTCCCCAAAGAGTTATCTCCAGGACCAGCTAGGAACCAGTTAGGGGGGTTTAACTAT AGTCCTAGTAGAGTCAGTAGCTTCCTCAATGGTTACACTCAGGGATACAATCCAAGTTTTGTTGGAGGGTATGGCGTTAGAATGGATGGCAGGTTTAGTC CTGTTACTGCTGGGCGGAGTAACTTTTCTCCATTTGGTAGTGGTTATGGGATGGGATTGAATTTTGAGCAGGTGTTGAACCCAGTTTATGGGGGAAATTC AAACATCAGTTCTAATGCTGGCTATGGACGAGTAAGTCCTTCATATAGTGGAAATGCAAGCAGGTACAGCAACCCCATTGGATTTAGTGGAGGCAATGGA GGAAGTAGTTCTGTCTTAAATCCAATTGCCCACTCTTTATGGGGAAATGGAAGTATTAATCATGCTTCTAACACCACAAACTCCAGTTCTTTTATGAGTT CTGGAACTGGGAGCTCAGGAATGGGTTCTTTTAGCAGTATGGGAGCACTTTGGGGTTCCTCTGCTAATTCTGAACAAGGTGGAGGAGTTCGCGCAGTCAA TAGCAGTAATCTTAGCTTTGGTGGTGGAGATTTTGATATTGGTCTAGAAGGGGTAGGGTATGGAAGGAACAGTAGGACAGGTGTTGCACCAGCATCATCT CATGCTGCATCTAATGGTGGTTATGATGGGGCTTATGCAGACTTTTATGAGAAGGGCTCATTATACGGGGATAATACCTGGCAATCTTCACCTTCGGAAC TGGATGTGTCTGGCTCATTTGGTTTTGGGCTTGGAAATGCAACTTCTGATGTTATGACTAAAAATTCTGCTGGTTATGTTGGTGGCTATAGTGTTGCTAA TAGACAATCAAATAGAGGTAAGTGTTTTGCCCCTTCTTTTTGTTGA
AA sequence Show only first row Show all	>Potri.006G015700.8 pacid=42769146 polypeptide=Potri.006G015700.8.p locus=Potri.006G015700 ID=Potri.006G015700.8.v4.1 annot-version=v4.1 MEMELGKLFIGGISWDTNEDRLKEYFRAFGEVLEAVIMKDRATGRARGFGFVVFADPAVAERVVMEKHLIDGRNVEAKKAVPREDQNTLNKNSSSVNGSP GPARTKKIFVGGLASTVTESDFRKYFDQFGVITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKELSPGPARNQLGGFNY SPSRVSSFLNGYTQGYNPSFVGGYGVRMDGRFSPVTAGRSNFSPFGSGYGMGLNFEQVLNPVYGGNSNISSNAGYGRVSPSYSGNASRYSNPIGFSGGNG GSSSVLNPIAHSLWGNGSINHASNTTNSSSFMSSGTGSSGMGSFSSMGALWGSSANSEQGGGVRAVNSSNLSFGGGDFDIGLEGVGYGRNSRTGVAPASS HAASNGGYDGAYADFYEKGSLYGDNTWQSSPSELDVSGSFGFGLGNATSDVMTKNSAGYVGGYSVANRQSNRGKCFAPSFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.006G015700 [exp]	0	1
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Potri.005G044900 [exp]	2.82	0.8770
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.001G055100 [exp]	5.83	0.8954
AT2G30933			Carbohydrate-binding X8 domain...		Potri.002G059600 [exp]	10.81	0.8505
AT5G35960			Protein kinase family protein ...		Potri.014G136300 [exp]	10.81	0.8760
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G014966 [exp]	16.00	0.8693
AT4G39390		NST-K1, ATNST-K...	A. THALIANA NUCLEOTIDE SUGAR T...		Potri.005G086700 [exp]	16.58	0.8661
AT1G27850			unknown protein		Potri.010G056200 [exp]	22.31	0.8643
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Potri.013G066200 [exp]	22.58	0.8544
AT5G48940			Leucine-rich repeat transmembr...		Potri.005G188700 [exp]	22.60	0.8620
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Potri.011G061500 [exp]	24.37	0.8578	ARAC2.1

Compare expression of checked genes

Potri.006G015700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.