Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23070 306 / 8e-105 Thymidine kinase (.1) AT3G07800 302 / 6e-104 Thymidine kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G009951 [exp] 492 / 3e-178 AT3G07800 292 / 7e-100 Thymidine kinase (.1) Potri.002G222300 [exp] 326 / 9e-114 AT3G07800 316 / 2e-110 Thymidine kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039055 [exp] 336 / 2e-116 AT5G23070 309 / 9e-106 Thymidine kinase (.1) Lus10012347 [exp] 313 / 3e-108 AT3G07800 303 / 4e-105 Thymidine kinase (.1) Lus10038804 [exp] 331 / 8e-108 AT5G64320 367 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006394 [exp] 176 / 4e-55 AT3G07800 178 / 2e-56 Thymidine kinase (.1) Lus10016925 [exp] 58 / 4e-11 AT5G23070 58 / 1e-11 Thymidine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00265 [poplar] [flax] TK Thymidine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G015800.1 pacid=42770169 polypeptide=Potri.006G015800.1.p locus=Potri.006G015800 ID=Potri.006G015800.1.v4.1 annot-version=v4.1 ATGAAGTCACTAATCACCCCAACAGTCTTATTCTCACCTATGTCAATAAAGGCCACACCTTTAGCTTCCAATCTCTTCTCTTTAGCTTCAAAATCCAATC TTTTCTCGAAAACTCAAAACCCCATTTCTTCTTCGCCTCTAAAACGCATTATGCTTTCAATTGAGCCTTCAAATTTTCTAATTCAGACTCGGTGTGTCCA TTCAAAATCCTCTCTTTCTACTTCTTCTGGTGAAATTCATGTGATTGTTGGCCCTATGTTTGCTGGCAAAACTACCACTCTTCTTCACCGTGTTCAAGCT GAAATCAATGATGGCAGAAACGTAGCAATTATAAAATCAAACAAGGATAATAGATATGGATTGGATTCAGTAGCGACACATGATGGGGTCAAATTGCCAT GTTGTGCGCTGCCCAATTTGTCATCATTCAGACAGAAATTAGGTCAGGATGCTTATGACCAGCTAGATGTGATCGGTATTGATGAAGCACAGTTCTTTGA AGACTTGTATGATTTCTGCCGTGAAGTTGCTGATCATGATGGCAAAACTGTAATAGTTGCTGGCCTGGATGGTGACTATCTGAGGAGGAGTTTTGGTTCT GTACTTGATATAATTCCCCTTGCTGATTCCGTCACTAAGTTAAGCGCTCGGTGTGAGATTTGTGGAAAACGTGCTTTCTTCACCTTAAGAAAGACAGAGG AGACACAGACAGAACTGATTGGCGGGGCTGATGTTTATATGCCTGTATGTCGCCAGCACTATGTCAGCGGACAAGTTGCAGTTGAAGCTGCAAGAATGGT CCTGGGATCGCAGAACGTTCAGTGTAGCTCTTGTGTGTAG
AA sequence Show only first row Show all	>Potri.006G015800.1 pacid=42770169 polypeptide=Potri.006G015800.1.p locus=Potri.006G015800 ID=Potri.006G015800.1.v4.1 annot-version=v4.1 MKSLITPTVLFSPMSIKATPLASNLFSLASKSNLFSKTQNPISSSPLKRIMLSIEPSNFLIQTRCVHSKSSLSTSSGEIHVIVGPMFAGKTTTLLHRVQA EINDGRNVAIIKSNKDNRYGLDSVATHDGVKLPCCALPNLSSFRQKLGQDAYDQLDVIGIDEAQFFEDLYDFCREVADHDGKTVIVAGLDGDYLRRSFGS VLDIIPLADSVTKLSARCEICGKRAFFTLRKTEETQTELIGGADVYMPVCRQHYVSGQVAVEAARMVLGSQNVQCSSCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23070			Thymidine kinase (.1)		Potri.006G015800 [exp]	0	1
					Potri.006G028500 [exp]	2.23	0.9476
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Potri.010G087600 [exp]	4.00	0.9435
AT4G36680			Tetratricopeptide repeat (TPR)...		Potri.005G125400 [exp]	5.65	0.9118
AT4G39470			Tetratricopeptide repeat (TPR)...		Potri.007G079200 [exp]	6.00	0.9258
					Potri.006G029500 [exp]	8.94	0.9049
AT5G62650			Tic22-like family protein (.1)		Potri.004G072100 [exp]	12.00	0.9010
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.018G000800 [exp]	13.60	0.8806
AT4G25370			Double Clp-N motif protein (.1...		Potri.015G131700 [exp]	15.65	0.9161
					Potri.014G049100 [exp]	16.49	0.8824
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.006G007600 [exp]	17.32	0.8714

Compare expression of checked genes

Potri.006G015800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.