Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64320 877 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 352 / 2e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 332 / 2e-104 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 332 / 4e-104 RPF2 rna processing factor 2 (.1) AT5G39710 332 / 4e-103 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 327 / 4e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 327 / 4e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 326 / 6e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 323 / 2e-99 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 320 / 2e-99 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G234500 [exp] 350 / 8e-110 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 345 / 1e-107 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 319 / 1e-98 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 315 / 2e-97 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 310 / 1e-95 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 310 / 2e-95 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 310 / 4e-95 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 309 / 2e-94 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 303 / 2e-93 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039056 [exp] 975 / 0 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038804 [exp] 413 / 7e-133 AT5G64320 367 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 335 / 4e-105 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 336 / 1e-104 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 331 / 3e-103 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 318 / 2e-97 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 318 / 3e-97 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 306 / 5e-93 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 305 / 2e-92 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 305 / 7e-92 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G015900.3 pacid=42770541 polypeptide=Potri.006G015900.3.p locus=Potri.006G015900 ID=Potri.006G015900.3.v4.1 annot-version=v4.1 ATGTTGAAGGGACCAAAGCTCGCCCCTGTGAGCAAAACCCTTCAAATTTTTATCAAAACCCAGTCTTTATCACTTTTTCCATCTGGATTTGTTAGAAAAT TCAGTGGTTTTAACTCAAAAGATAATGAGTCGGCACATGAGACTGAATGGGAAAGATTACTCAAGCCATTTGACCTTAAAGAACTTAGAAGATCTTTCAA TAAGATTACACCATTTCAACTTTGTAAACTTCTTGAATTGCCACTCGATGTGGAAACTTCAATGGAGATATTCAAGTGGGCTGGTGCCCAAAAGGGCTAT TGCCACTCATTTAGTGTGTACTATTTGTTGATTGATAAGCTTGGGGCAGCTGCGGGTTTTAAGGTTATAGATAGGTTGTTATTGCAAATGAAAGAGGAGG GGATTGTTTTTAGAGAGTCCCTTTTTATTTTGATTATGAAATATTATGGAAGAGCTGGTTTGCCTGGACAAGCAACTAGGTTGTTATTGGATATGAAGGG TGTTTATTGTTGTGAACCAAGCTTTAGGTCGTATAATGTTGTATTGGATGTATTAGTAGTTGGTAATTGTCCTAGTGTTGCATCCAATGTTTTCTATGAC ATGTTGAGTAAGGGTGTTTCGCCAAATGATTATACATTTGGGCTGGTGATGAAAGCACTTTGTATGGTTAATGAGGTGGATAATGCCTGCTTGCTGCTTA GGGACATGACTAAACATGGTTGTGTGCCAAATTCGATGATTTACCAGACTTTGATAGATGCACTTTCCAAGAGAGATAGAGTCGACGAGGCCTTGAAACT TTTGGAGGAAATGTTCTTGATGGGTTGCCCGCCTGACGTCAATACCTTCAATACTGTTATTTATGGTTTCTGTAGGCTCAATCGAGTTCTTGAGGGAGCA AAATTGGTTGACCGGATGATTCTCAAGGGATTTACCCCTAATGACATGACTTATGGATACCTAATGCATGGATTGTGTAAAACATGTCGAATCGATGAAG CTCAGGCATTGTTGAGCAAAGTCCCTGGTCCAAATGTTGTGCATTTCAATACACTGGTTAATGGATTTGTGAGGAATGGAAGATTGAATGAAGCCACAGC TTTTGTTTATGACAAGATGATAAACAATGGCTATGTTCCTGATGTTTTCACATTTAGCACACTTGTTAATGGCCTTTGCAAGAAGGGGCTTTTTGGTTCT GCTCTTGAATTGGTTAATGACATGGATGCTAAGGGGTGCAAGCCCAACTTAAATACATATACAATTTTGATTGATGGGTTCTGCAAGAAAGGCCAACTAG AGGAAGCTGGTCTTATTTTACGTGAGATGTTAACTAAGGGATTTAGTCTGAATACAGTGGGATACAATGCCCTAATATCTGCCTTGTGCAAGCATGGAAA GATTCATGAAGCCCTGGACATGTTTGGTGAAATGTCAAGTAAAGGATGCAAGCCTGACATATTTACTTTTAATTCCTTAATTTTTGGTCTGTGCAGGGTT GATGAGATGGAGGATGCTTTGGCTCTTTACCGCGATATGGTTTTAGAGGGTGTTATTGCTAACAGTGTAACTTTCAACACGTTGATTCATGCTTTTTTGA GGAGAGGTGAAATCCAAGAAGCCCTTAAGCTTGTAAATGATATGTTATTTAGAGGATGCCCTCTTGATGAAATCACTTACAATGGTCTAATAAAGGCACT TTGCAAAACTGGGGCTGTTGAGAAGGGACTGGGTTTGTTTGAAGAAATGATCAGGAAGGGGCTAACCCCCAGCATTATCACTTGTAATATTCTGATCAAT GGCTTCTGTACAGCTGGCAAAGTACATAATGCACTAGAGTTTATGAGAGACATGATTCATCGAGGTTTCTCGCCAGACATAGTCACTTACAATAGCCTAA TTAATGGTTTATGCAAGAGAGGACGCATCCAAGAGGCTTTGAATCTCTTTGAGAAATTGCAGGCTGAAGGAATACAACCTGATTCTATTACATACAACAC TCTGATTTGCTGGCTCTGTAGAGAGGGAGCATTTGATGATGCATGTTTTCTTCTCTATAGAGGTGTTGAGAATGGCTTTGTACCTAATGATGTGACATGG AATATCTTGGTTTACAATTTCGGTAAACAAAGTAACTCAGAGGGTCAGACCATCACCTATGCTCAGTTTTCGTGA
AA sequence Show only first row Show all	>Potri.006G015900.3 pacid=42770541 polypeptide=Potri.006G015900.3.p locus=Potri.006G015900 ID=Potri.006G015900.3.v4.1 annot-version=v4.1 MLKGPKLAPVSKTLQIFIKTQSLSLFPSGFVRKFSGFNSKDNESAHETEWERLLKPFDLKELRRSFNKITPFQLCKLLELPLDVETSMEIFKWAGAQKGY CHSFSVYYLLIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYD MLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGA KLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGS ALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRV DEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILIN GFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTW NILVYNFGKQSNSEGQTITYAQFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64320			Pentatricopeptide repeat (PPR)...		Potri.006G015900 [exp]	0	1
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.018G033300 [exp]	1.73	0.8106
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072566 [exp]	5.19	0.7960
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	6.92	0.7946
AT1G69020			Prolyl oligopeptidase family p...		Potri.010G137801 [exp]	8.60	0.7990
AT4G00500			alpha/beta-Hydrolases superfam...		Potri.014G083600 [exp]	11.95	0.7727
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.013G041201 [exp]	16.09	0.7829
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.006G039700 [exp]	16.49	0.7000
AT1G63130			Tetratricopeptide repeat (TPR)...		Potri.005G046000 [exp]	17.43	0.7644
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Potri.006G065000 [exp]	25.49	0.7553	Pt-ATMAK10.3
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	26.49	0.7885

Compare expression of checked genes

Potri.006G015900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.