Plant FIBer expression Database

Potri.006G016100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16460 40 / 0.0005 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G009800
[exp]
268 / 4e-91 AT4G16460 / unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000538
[exp]
64 / 3e-12 ND 57 / 4e-10
PFAM info
Representative CDS sequence
>Potri.006G016100.1 pacid=42767817 polypeptide=Potri.006G016100.1.p locus=Potri.006G016100 ID=Potri.006G016100.1.v4.1 annot-version=v4.1
ATGAAGGAGTTAACGGAAAGAGCAGTGTTGAGGAATTTGCAAAAGGAGCAAGAAAGAGAAAGGCGGCGATTACGAGACAGACAAAGAAGGCAATCAATGA
GTGTTGAAGAGAGAGAGAATCATCTTGCAAGACGACGTAGAAACTATCAGTTGAGGAGAGAAAGAGCACAAAATGTGAGAGAACCTCAGATCAATCAATC
CGGTCTTGTGGATAGTGATGAATCGCCTATGCTCCTGAGTGATGAAAATCATCAAACAGCTATCTCGGTTCCTGTCCAATCTAATGGTGTTTGTCATGCT
GATTTGGATCAAAGACAAGGAAGTTTTAATGCAGGCAATGCAAATTCCGTGGGTTTAGAAGTTCCAGCGCATAAATTAGCTAAATTACCTATAAGGTCAC
GTCTAAACCATATAAAACACCTTGCTCGGTCACTGGTTGATACCCTGGATATTGGTGATACTCACAAAATTCCAGCAGATTTGACGATGAAGGGGGAGAC
AGCTTCCAATTGCACACCTCCAAAAGCATTACGATTGAATCGTGTTAAGCATCTTGCACGTGTGTTAAGCTCTGATATAACAACGACAACAGCTCAAAAT
CACAATCGTGAAACAGATGGAGAACATAATCTGCCAAGGGGAGAACATCTGATGAACAGCAATCTGCCAAAAGTTGTTCAGACTAACAATGTCAATGGTG
GAGAGGAATGA
AA sequence
>Potri.006G016100.1 pacid=42767817 polypeptide=Potri.006G016100.1.p locus=Potri.006G016100 ID=Potri.006G016100.1.v4.1 annot-version=v4.1
MKELTERAVLRNLQKEQERERRRLRDRQRRQSMSVEERENHLARRRRNYQLRRERAQNVREPQINQSGLVDSDESPMLLSDENHQTAISVPVQSNGVCHA
DLDQRQGSFNAGNANSVGLEVPAHKLAKLPIRSRLNHIKHLARSLVDTLDIGDTHKIPADLTMKGETASNCTPPKALRLNRVKHLARVLSSDITTTTAQN
HNRETDGEHNLPRGEHLMNSNLPKVVQTNNVNGGEE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16460 unknown protein Potri.006G016100
[exp]
0 1
AT3G63530 BB2, BB BIG BROTHER, RING/U-box superf... Potri.009G062100
[exp]
2.23 0.7317
AT1G08660 MGP2 MALE GAMETOPHYTE DEFECTIVE 2 (... Potri.014G145400
[exp]
5.09 0.6997
AT5G17250 Alkaline-phosphatase-like fami... Potri.003G059300
[exp]
8.00 0.7169
AT3G09320 DHHC-type zinc finger family p... Potri.016G100200
[exp]
8.12 0.7472
AT2G23093 Major facilitator superfamily ... Potri.007G052700
[exp]
8.83 0.7367
AT5G42320 Zn-dependent exopeptidases sup... Potri.002G010800
[exp]
9.79 0.6646
AT1G02145 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINO... Potri.002G139200
[exp]
10.77 0.7473
AT3G03810 EDA30 embryo sac development arrest ... Potri.019G036600
[exp]
18.13 0.7235
AT5G02410 ALG10 homolog of yeast ALG10, DIE2/A... Potri.006G084800
[exp]
24.49 0.6676
AT5G22350 ELM1 ELONGATED MITOCHONDRIA 1, Prot... Potri.016G075500
[exp]
33.46 0.6732

Potri.006G016100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.