Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35760 250 / 4e-85 Uncharacterised protein family (UPF0497) (.1) AT4G16442 208 / 6e-69 Uncharacterised protein family (UPF0497) (.1) AT4G25830 72 / 8e-16 Uncharacterised protein family (UPF0497) (.1) AT1G17200 66 / 3e-13 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT4G15630 57 / 5e-10 Uncharacterised protein family (UPF0497) (.1) AT5G15290 54 / 6e-09 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT4G15610 52 / 3e-08 Uncharacterised protein family (UPF0497) (.1) AT3G14380 47 / 1e-06 Uncharacterised protein family (UPF0497) (.1) AT3G16300 45 / 9e-06 Uncharacterised protein family (UPF0497) (.1) AT1G03700 44 / 2e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G008800 [exp] 330 / 1e-116 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1) Potri.018G094500 [exp] 91 / 9e-23 AT4G25830 128 / 9e-38 Uncharacterised protein family (UPF0497) (.1) Potri.011G140200 [exp] 67 / 1e-13 AT1G17200 223 / 3e-74 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.001G436400 [exp] 66 / 4e-13 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.010G208300 [exp] 54 / 3e-09 AT5G54980 176 / 2e-56 Uncharacterised protein family (UPF0497) (.1) Potri.008G088700 [exp] 48 / 7e-07 AT1G14160 163 / 3e-51 Uncharacterised protein family (UPF0497) (.1) Potri.003G050400 [exp] 48 / 8e-07 AT3G16300 137 / 2e-40 Uncharacterised protein family (UPF0497) (.1) Potri.012G032300 [exp] 46 / 2e-06 AT5G15290 207 / 1e-68 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 45 / 5e-06 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039060 [exp] 254 / 1e-86 AT2G35760 242 / 5e-82 Uncharacterised protein family (UPF0497) (.1) Lus10038800 [exp] 253 / 2e-86 AT2G35760 243 / 2e-82 Uncharacterised protein family (UPF0497) (.1) Lus10019999 [exp] 67 / 1e-13 AT4G25830 154 / 2e-47 Uncharacterised protein family (UPF0497) (.1) Lus10033971 [exp] 50 / 1e-07 AT4G15630 162 / 1e-51 Uncharacterised protein family (UPF0497) (.1) Lus10012809 [exp] 50 / 1e-07 AT4G15630 179 / 4e-57 Uncharacterised protein family (UPF0497) (.1) Lus10015528 [exp] 50 / 2e-07 AT4G25830 108 / 2e-29 Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 49 / 4e-07 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10032548 [exp] 47 / 2e-06 AT1G03700 62 / 3e-14 Uncharacterised protein family (UPF0497) (.1) Lus10012808 [exp] 44 / 1e-05 AT3G06390 119 / 1e-34 Uncharacterised protein family (UPF0497) (.1) Lus10015375 [exp] 44 / 3e-05 AT5G15290 219 / 1e-73 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.006G016900.1 pacid=42767653 polypeptide=Potri.006G016900.1.p locus=Potri.006G016900 ID=Potri.006G016900.1.v4.1 annot-version=v4.1 ATGAGTTATTTAGGTGTTGGTGTTAGTCCTGGAAATGTACCAGTGTATCATGGCATGAACTTGAAGGTTATTGATAGGAGAGTGAGGCTAGCAGAGTTGG TTTTGAGGTGTGTGATCTGTGCTTTAGGAGTTCTTGCTGCTGTTCTTGTTGGTACAGATACTCAAGTTAAAGAAATCTTCTCAATTCAAAAGAAAGCAAG GTTCACTGACATGAAAGCTCTTGTCTTTTTGGTGGTGGCTAATGGGATAGCAGCAGCCTACTCGTTGGTTCAAGGGGTGCGCTGTGTTGTGGGCATGGTT AAAGGAAGTGTTCTGTTTAGCAAGCCCTTGGCTTGGGTTATTTTCTCTGGGGATCAGATGATGGCATACCTAACTTTGTCTGCAGTGGCAGCTGCTGTGC AATCAGCATCATTTGCGAAGTTGGGACAGCCTGATCTCCAATGGATGAAGATATGCAACATGTACGGAAAGTTCTGTAACCAAGTTGGTGAGGGAATAGC AAGCGCGCTGTTGGTCAGTGTTAGCATGGTTGTCTTGTCTTGTATCTCTTCTTTCAGTCTCTTCCGCTTGTATGGTGGCAACAAGGGCAAGGACGGCGCA AGGTGGTAG
AA sequence Show only first row Show all	>Potri.006G016900.1 pacid=42767653 polypeptide=Potri.006G016900.1.p locus=Potri.006G016900 ID=Potri.006G016900.1.v4.1 annot-version=v4.1 MSYLGVGVSPGNVPVYHGMNLKVIDRRVRLAELVLRCVICALGVLAAVLVGTDTQVKEIFSIQKKARFTDMKALVFLVVANGIAAAYSLVQGVRCVVGMV KGSVLFSKPLAWVIFSGDQMMAYLTLSAVAAAVQSASFAKLGQPDLQWMKICNMYGKFCNQVGEGIASALLVSVSMVVLSCISSFSLFRLYGGNKGKDGA RW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35760			Uncharacterised protein family...		Potri.006G016900 [exp]	0	1
AT2G45530			RING/U-box superfamily protein...		Potri.001G452800 [exp]	2.00	0.7648
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.005G053900 [exp]	5.19	0.7381
AT3G08880			unknown protein		Potri.012G107200 [exp]	7.00	0.7420
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.016G119800 [exp]	8.71	0.7442
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Potri.016G100100 [exp]	10.95	0.7432
AT2G23093			Major facilitator superfamily ...		Potri.007G052700 [exp]	15.81	0.7374
AT2G44065			Ribosomal protein L2 family (....		Potri.017G007700 [exp]	17.32	0.6761
AT5G41760			Nucleotide-sugar transporter f...		Potri.001G094600 [exp]	19.39	0.7579
AT5G54530			Protein of unknown function, D...		Potri.001G410300 [exp]	24.16	0.6772
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.017G140000 [exp]	26.87	0.7150	EXP2.10

Compare expression of checked genes

Potri.006G016900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.