Plant FIBer expression Database

Potri.006G017000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16440 722 / 0 ferredoxin hydrogenases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G008700
[exp]
912 / 0 AT4G16440 725 / 0.0 ferredoxin hydrogenases (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039061
[exp]
734 / 0 AT4G16440 696 / 0.0 ferredoxin hydrogenases (.1)
Lus10038798
[exp]
642 / 0 AT4G16440 614 / 0.0 ferredoxin hydrogenases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02256 Fe_hyd_SSU Iron hydrogenase small subunit
PF02906 Fe_hyd_lg_C Iron only hydrogenase large subunit, C-terminal domain
Representative CDS sequence
>Potri.006G017000.1 pacid=42767011 polypeptide=Potri.006G017000.1.p locus=Potri.006G017000 ID=Potri.006G017000.1.v4.1 annot-version=v4.1
ATGTCGGAGAAATTCTCACCGACGTTGAGAATTGGAGATCTGAGTGACTTTATCGCTCCTTCTCAAGCTTGTGTTGTTTCTTTGAAAGGTCTCAAAACGA
CAACACCTAACACCAGAAAACGCGACAAACCTGAGGTTGCTATTGCTAATAGAGAGCAGAATGACCCTGTTAAAATTTCTCTTAAGGACTGTTTGGCTTG
CAGCGGGTGTATAACATCAGCAGAGACAGTTATGCTTGAGAAGCAAAGTTTGGATGAGTTCTTATCCAATATTGACAAAGGAAAAGCTATCATTGTTTCT
CTGTCTCCACAATCAAGAGCTTCTCTCGCTTTTTATTTTGGCATCTCTCCACTTCAGGTTTTTAAGAAACTCACAACGTTTTTTAAGTCATTGGGAGTGA
AGGCTGTATTTGATACAAGTTGCAGCAGGGACTTAACACTTGTAGAGACTTGTAATGAGTTTCTTTGTCGTTACAAACAGAGCCAGTTGAACATTGATGA
AAAATCTAATCCATCTTTGCCTATGCTTTCTTCAGCATGTCCAGGTTGGATATGCTATGCTGAAAAGCAACTAGGATCCTACATTCTGCCTTATGTATCT
TCTGTGAAGAGCCCACAACAAACAATTGGAGCTACCATTAAGCATCACATTTGCCAAAAAATGGGCCTCAGGCCAGATGAGGTTTATCATGTGACTGTGA
TGCCTTGTTATGATAAGAAGCTTGAGGCAGCAAGGGGTGACTTTGTTTTTGAAGTGGAACAAGAAGATGCAAACAAGAATAGTCTAAGGATTACAGAGGT
TGATTCAGTTTTGACAACTGGAGAAGTCTTAGATTTGATAAAGTTAAAAGCAGTGGATATTGAAACCTTAGATGACTCACCTCTAGATAAAATGTTGACA
AATGTTAGTGAAGAAGGATATCTCTATGGAGTACCTGGAAGTTCTGGTGGTTATGCTGAAACAGTGCTTCGGTATGCTGCTAGAATGGTATTTGGAAGAG
AAATTGAAGGGCCTTTGGCCTTCAGAAGTCTTAGAAACAACGATTTCTGTGAAGTTACTTTGGAAGTGGATGGAAAAGTTGTACTGAAATTTGCCCTATG
TTACGGCTTTCAAAACCTACAAAATATTGTAAGAAAAGTCAAAATGGGAAGATGTGATTATCATTTTGTGGAGATTATGGCATGCCCATCAGGTTGCCTG
AATGGTGGTGGTCAAATCAAGCCAAAGCCTCAACAATCTCCAAGGGAGCTGCTTCAGTCGCTAGAAACTATTTATATGGAAAATATTTTGGTAAAAGATC
CTTTTGAGAATCCTCTTGTTAAATCCTTATACGATGAGTGGCTTGACCAACCTGGTTCGGAGAAAGCTAAAAGGCACATGCATACAGAATATCACCCTGT
GGTAAAAAGCGTAACTGCCCAATTGCATAACTGGTAA
AA sequence
>Potri.006G017000.1 pacid=42767011 polypeptide=Potri.006G017000.1.p locus=Potri.006G017000 ID=Potri.006G017000.1.v4.1 annot-version=v4.1
MSEKFSPTLRIGDLSDFIAPSQACVVSLKGLKTTTPNTRKRDKPEVAIANREQNDPVKISLKDCLACSGCITSAETVMLEKQSLDEFLSNIDKGKAIIVS
LSPQSRASLAFYFGISPLQVFKKLTTFFKSLGVKAVFDTSCSRDLTLVETCNEFLCRYKQSQLNIDEKSNPSLPMLSSACPGWICYAEKQLGSYILPYVS
SVKSPQQTIGATIKHHICQKMGLRPDEVYHVTVMPCYDKKLEAARGDFVFEVEQEDANKNSLRITEVDSVLTTGEVLDLIKLKAVDIETLDDSPLDKMLT
NVSEEGYLYGVPGSSGGYAETVLRYAARMVFGREIEGPLAFRSLRNNDFCEVTLEVDGKVVLKFALCYGFQNLQNIVRKVKMGRCDYHFVEIMACPSGCL
NGGGQIKPKPQQSPRELLQSLETIYMENILVKDPFENPLVKSLYDEWLDQPGSEKAKRHMHTEYHPVVKSVTAQLHNW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16440 ferredoxin hydrogenases (.1) Potri.006G017000
[exp]
0 1
AT4G36210 Protein of unknown function (D... Potri.007G016100
[exp]
9.16 0.6174
AT3G12010 unknown protein Potri.006G195000
[exp]
9.79 0.5851
AT2G48110 MED33B, REF4 reduced epidermal fluorescence... Potri.002G215600
[exp]
12.84 0.6544
AT4G16440 ferredoxin hydrogenases (.1) Potri.016G008700
[exp]
16.12 0.6502
AT5G27380 GSHB, GSH2 glutathione synthetase 2 (.1) Potri.013G026800
[exp]
17.49 0.5836
AT5G01960 RING/U-box superfamily protein... Potri.016G141200
[exp]
21.49 0.5989
AT3G07690 6-phosphogluconate dehydrogena... Potri.003G203800
[exp]
36.16 0.6353
AT3G25910 Protein of unknown function (D... Potri.006G154300
[exp]
36.94 0.6357
AT3G52660 RNA-binding (RRM/RBD/RNP motif... Potri.006G212400
[exp]
44.72 0.6337
AT4G28880 CKL3 casein kinase I-like 3 (.1) Potri.006G239900
[exp]
44.86 0.6180

Potri.006G017000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.