Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17240 241 / 7e-77 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G008400 [exp] 585 / 0 AT4G17240 222 / 2e-69 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039062 [exp] 368 / 9e-126 AT4G17240 255 / 3e-82 unknown protein Lus10038797 [exp] 353 / 9e-120 AT4G17240 251 / 1e-80 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G017200.1 pacid=42770122 polypeptide=Potri.006G017200.1.p locus=Potri.006G017200 ID=Potri.006G017200.1.v4.1 annot-version=v4.1 ATGGCTTCTCGCTACAATTCCTACGATTCAAGGTCCTCAACCACCTCATATTTCTCAGACCCATCTTCATCCGCTGAGCTAAGCTACAAACACTCAACTT CACGCGCAATTGTCAAGTCCAAACCAGCAGATTTGTCAAAAATCAAGGTAAAAAACAATGGAAATGATCACAATTTAAGCAAAATGGTGAAGAAATTCAT GGAGAAGAAATCAGTATCTTCTGCGTCGAGTAAAGGGTCATCGAGTAAGGCTGTGGGGTTGGTGATTCCATCGGATCTAATAGCTGAGGACTTGAAAAAG ACTGCGAGGAAAGGAACTGGTTTTATGGGGTTGCAGAAGAAGTTATTTGGAACAGAAAATAAGAAGGAGAAAAAGGAAGCGAAGGCGTTGACAGAGGCAA AAGTGAATAGTAATACAAGGACTTTAGCTATGGTTTTGAAGAGTGAGAGAGAGCTTTTGAGTGCTAATAAAGAACAAGAATTGGAGATTGATAAGCTTAA GTTGATGCTTGAAGACAAGAACAGAGAAGTTGAGAAGTTGAAAGATTTGTGCTTGAAGCAAAGAGAAGAGGTTAGGTCATTAAAAAGTTCAATACTTTTT CCTGACGCAATGAATTCTCAGCTTCAAGAGTTATTGAAGCAGCGAGGATCAGAATTGAAGCAAGCCAAACAACTCATTCCAACTCTTCAGAGGCAGGTCA CTTCCCTTACAGGACAATTGCAATGCCTTGCAGAGGATCTTGCTGAGGTGAAGGCAGATAAATATGCAAGGGCACATATCCAATATCATGGCAGCTCACC AGGGACACCAACGTATGATCATGAAGAAACTGCAAATTCCTTAGAGTTTAGCTCTTGCGACGGTGCAACCCCGGGTAGTCCAGATGACACGTTTCTTAAG GATTTTAATCCATGTTTAACGCCCTATTGTGCCAAGAAAAAGTCCAAGGAATTCGAGGCAATGGGCTACGAGTCTTCGCTTGATGGGAGCTTATCCGGGA GCAATACACAAATGAGCAATGAACTTAGCTTCAGCTCTCGTGTCAGGAAGTTATCCAAAAGTTCAGACTGTTACCAGAATTCCAACACAGGAAGCACAAT GACCCGAGCAACTCGCAGGTCAGATGAAAGCAAAGGAGCATACAGAAAGCAAATGCAGCAGCAAAGACATTTCTAG
AA sequence Show only first row Show all	>Potri.006G017200.1 pacid=42770122 polypeptide=Potri.006G017200.1.p locus=Potri.006G017200 ID=Potri.006G017200.1.v4.1 annot-version=v4.1 MASRYNSYDSRSSTTSYFSDPSSSAELSYKHSTSRAIVKSKPADLSKIKVKNNGNDHNLSKMVKKFMEKKSVSSASSKGSSSKAVGLVIPSDLIAEDLKK TARKGTGFMGLQKKLFGTENKKEKKEAKALTEAKVNSNTRTLAMVLKSERELLSANKEQELEIDKLKLMLEDKNREVEKLKDLCLKQREEVRSLKSSILF PDAMNSQLQELLKQRGSELKQAKQLIPTLQRQVTSLTGQLQCLAEDLAEVKADKYARAHIQYHGSSPGTPTYDHEETANSLEFSSCDGATPGSPDDTFLK DFNPCLTPYCAKKKSKEFEAMGYESSLDGSLSGSNTQMSNELSFSSRVRKLSKSSDCYQNSNTGSTMTRATRRSDESKGAYRKQMQQQRHF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17240			unknown protein		Potri.006G017200 [exp]	0	1
AT1G64960		HEB1	hypersensitive to excess boron...		Potri.007G055400 [exp]	1.41	0.9565
AT5G05240			Uncharacterised conserved prot...		Potri.019G058200 [exp]	4.00	0.9504
AT3G27350			unknown protein		Potri.001G336300 [exp]	5.29	0.9539
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Potri.009G089200 [exp]	8.48	0.9434
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Potri.014G155900 [exp]	8.66	0.9507
AT5G65120			unknown protein		Potri.007G090500 [exp]	9.48	0.9416
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.014G070100 [exp]	10.72	0.8940
AT4G17240			unknown protein		Potri.016G008400 [exp]	12.24	0.9260
AT4G14310			Transducin/WD40 repeat-like su...		Potri.008G169200 [exp]	12.44	0.9238
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Potri.001G041400 [exp]	13.78	0.9416

Compare expression of checked genes

Potri.006G017200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.