Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55600 494 / 6e-167 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein AT1G68580 276 / 2e-83 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G17330 73 / 5e-13 ATG2484-1 G2484-1 protein (.1) AT1G09320 61 / 2e-09 agenet domain-containing protein (.1) AT1G26540 56 / 8e-08 Agenet domain-containing protein (.1) AT5G58610 53 / 7e-07 PHD finger transcription factor, putative (.1) AT3G06520 52 / 1e-06 agenet domain-containing protein (.1) AT5G42670 51 / 1e-06 Agenet domain-containing protein (.1) AT1G11420 46 / 0.0001 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT1G06340 42 / 0.0002 Plant Tudor-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G007500 [exp] 1157 / 0 AT5G55600 491 / 7e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.001G365800 [exp] 545 / 0 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.010G126700 [exp] 317 / 3e-98 AT1G68580 478 / 1e-160 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.008G119400 [exp] 317 / 3e-98 AT1G68580 459 / 9e-154 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.003G077600 [exp] 76 / 8e-14 AT4G17330 773 / 0.0 G2484-1 protein (.1) Potri.001G157300 [exp] 73 / 4e-13 AT4G17330 726 / 0.0 G2484-1 protein (.1) Potri.013G006900 [exp] 55 / 1e-07 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.009G072600 [exp] 55 / 2e-07 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.005G011100 [exp] 52 / 6e-07 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003906 [exp] 610 / 0 AT5G55600 455 / 3e-152 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10007115 [exp] 526 / 6e-179 AT5G55600 606 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10016606 [exp] 523 / 2e-177 AT5G55600 604 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10004730 [exp] 71 / 3e-12 AT4G17330 772 / 0.0 G2484-1 protein (.1) Lus10007793 [exp] 70 / 7e-12 AT4G17330 508 / 1e-147 G2484-1 protein (.1) Lus10031429 [exp] 62 / 8e-10 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10010903 [exp] 62 / 9e-10 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1) Lus10037805 [exp] 58 / 2e-08 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10027325 [exp] 54 / 3e-08 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1) Lus10017088 [exp] 56 / 6e-08 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF05641 [poplar] [flax] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Potri.006G017400.1 pacid=42768478 polypeptide=Potri.006G017400.1.p locus=Potri.006G017400 ID=Potri.006G017400.1.v4.1 annot-version=v4.1 ATGGTCATTATGTCTGTTAGTAATGATGTTTTTGTGGCTTGGGAGGAGCACATTATATGCCATGAACGTGGTAGCCGTGTGGTTCATTATCACTTGAAGG ATACATTTGGGGGTTTAGTTCTTGCTGTTATAGGGACTGAGAGGAGTATAAGGCACATGACATATGTAGTTTCTGACGAGTTTTTGGAAGCCTATGGGTC CAATGAGTCCCTCAATGCATCTACGAAATGGAGAGCCCGGCGAGAAGTTGTGGACTGGTTGACATCAATGGTGTCAAATGAAGGATCCCCTCTACATGTT TCAAATGCACAGATAAATGGCTCAGCTCAAGGTTCAGGATCTTTTGGAGTATCAGTGACTGGATTCAATGCTTCGAAAACCTATTTGCCAGTTCGGATGG CTCGAAGCAAATTGAAGGTTCAGAATTCACACATTAAGTGGTTTGGTGCGGCATGGATATGTGCTAAAGAACTCAAGCACTACCCAGCCTTTTTCAGAAA TGGGACTACCATAACTGTCCATTCCTTCGTATTTATAATGGCTGAAGAAAAAGGCCGCTACCTTGGATACCTGGAAGATATGTATGAAGACAAAAAGGGG CAGAAGAAGGTAAAGGTGCGGTGGTTTCACCATAACCAGGAAGTCAAGGGTGTAATTCCTCAACTGAATCCACACCCCCAAGAAGTTTTCATCACACCTA ATGTCCAAGTGATCAGTGCAGAGTATATTGATTGCCCAGCAACAGTCTTGACACCCCGACATTATGATAAATGTATGGCTGGTGTTTCACATACATCAAC ATCCGGTGTCCACATGTGCTTTAGGCAGTTTAAAAACAACAAGATCAAGCCGTTTGCTCTTACTAAATTGCATGGATACTTCAATCAAGCAATCCTCTCT ACTTTGGATGGATCTATTGTCCCTAAGAAAAAGGTTAGGTACGATAATTTGTACAAGGAAGACGAGGAAGAATTGACCCATGATTACCCTACCAGTGTAG GTAGCAAGAGAAGTAGAACATCCAAGGAGCAAGACAGACTTGAGAGTGGATCAGGTCTCAGAAACTGGGCCTGTGGAAACCAGATAGCAAAATGTAAATC AGGATACCCGAAACTGAAGCTACGGTTATCAAAGGTTTCCATGGGAATTGAGTTTGTTATACCCCAGTCCAAATGTTCTGCTCCTTTCAAAGTGAATGAA AAGATAGAGATGCTCTGCCAAGATAGTGGGATTCGAGGCTGCTGGTTTAGATGTAAGGTGTTGCAGTCCTCTCAGAAGCATCTGAAAGTTCAATATGAAG ATGTCCAGTATGTGGAGGGATCTGGAAATCTAGAGGAATGGGTCCCTGCTTCCAGAGTGGCTGCTCCTGATAAACTTGGCATGAGATGTTTAGGTCGCAA GACAATCCGGCCACATCCTCAAAATCATTCTACTGACCATATTTTTGAGGTTGGAGCCCCAGTTGATGCATGGTGGAGTGATGGATGGTGGGAGGGTGTT GTATCTGGAGTTGACATCTCTGGGAGTGATTGCCTGCAAGTTTACCTCCCTGGTGAAGGCAAGTTCCTGACTGTCCCAAGGAAGAATGTGAGGAGTTCCC GAGATTGGGTTGATAACAGATGGGTTGATGTAATGGCAAAGCCTGATATACTCCATCATCTATCTGCAGATGCCATTTCTATCATCCAGCTTGAGGCACG AGGTTGTGATACTGCTGCATCACTGGAGCACAAATTTGTCAAAACTTCCAGACTTGAAGCTATTGAAGAAGATGAACCCTTACCTGGTTCAGTTGTGTCT GGTGATCTCAAAAATGTTAAGGAGGTCTATTTGAGACAGAGGCATGGTGTAAATGAGAAGGATGAACTAAAAACACATGGAGCTGTTGATGATGATGATG TTGGCGGTGATTTTCATCATGAGGAGAAAGCGAACAATGTTGCTATCGCGGCTTATGTTGACAATGGTGGTGAAGATAGCTCTGGCAATAACACAGAGTT TCTTTTGGACGAAGATCTTAAATCTGTTAACAAGATAAGTGAAGCAGCAAAAACTTTATAA
AA sequence Show only first row Show all	>Potri.006G017400.1 pacid=42768478 polypeptide=Potri.006G017400.1.p locus=Potri.006G017400 ID=Potri.006G017400.1.v4.1 annot-version=v4.1 MVIMSVSNDVFVAWEEHIICHERGSRVVHYHLKDTFGGLVLAVIGTERSIRHMTYVVSDEFLEAYGSNESLNASTKWRARREVVDWLTSMVSNEGSPLHV SNAQINGSAQGSGSFGVSVTGFNASKTYLPVRMARSKLKVQNSHIKWFGAAWICAKELKHYPAFFRNGTTITVHSFVFIMAEEKGRYLGYLEDMYEDKKG QKKVKVRWFHHNQEVKGVIPQLNPHPQEVFITPNVQVISAEYIDCPATVLTPRHYDKCMAGVSHTSTSGVHMCFRQFKNNKIKPFALTKLHGYFNQAILS TLDGSIVPKKKVRYDNLYKEDEEELTHDYPTSVGSKRSRTSKEQDRLESGSGLRNWACGNQIAKCKSGYPKLKLRLSKVSMGIEFVIPQSKCSAPFKVNE KIEMLCQDSGIRGCWFRCKVLQSSQKHLKVQYEDVQYVEGSGNLEEWVPASRVAAPDKLGMRCLGRKTIRPHPQNHSTDHIFEVGAPVDAWWSDGWWEGV VSGVDISGSDCLQVYLPGEGKFLTVPRKNVRSSRDWVDNRWVDVMAKPDILHHLSADAISIIQLEARGCDTAASLEHKFVKTSRLEAIEEDEPLPGSVVS GDLKNVKEVYLRQRHGVNEKDELKTHGAVDDDDVGGDFHHEEKANNVAIAAYVDNGGEDSSGNNTEFLLDEDLKSVNKISEAAKTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.007G137101 [exp]	2.82	0.8737
AT3G24150			unknown protein		Potri.018G128700 [exp]	4.89	0.8276
AT5G01260			Carbohydrate-binding-like fold...		Potri.006G099200 [exp]	5.65	0.8655
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G038400 [exp]	6.48	0.8515
AT5G18750			DNAJ heat shock N-terminal dom...		Potri.010G018800 [exp]	7.48	0.8485
AT1G52620			Pentatricopeptide repeat (PPR)...		Potri.001G139200 [exp]	7.74	0.8549
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.016G085500 [exp]	8.66	0.8412
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Potri.004G120500 [exp]	9.48	0.8379
AT3G14470			NB-ARC domain-containing disea...		Potri.001G379700 [exp]	10.00	0.8555
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.011G145800 [exp]	10.72	0.8286

Compare expression of checked genes

Potri.006G017400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.