Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16380 82 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G49420 70 / 5e-15 Heavy metal transport/detoxification superfamily protein (.1) AT1G51090 64 / 5e-13 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G018901 [exp] 276 / 8e-96 AT4G16380 81 / 1e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019800 [exp] 225 / 1e-75 AT4G16380 82 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G020100 [exp] 220 / 4e-74 AT4G16380 76 / 7e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019700 [exp] 219 / 9e-74 AT4G16380 76 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G020500 [exp] 216 / 2e-72 AT4G16380 73 / 9e-16 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019400 [exp] 214 / 1e-71 AT4G16380 79 / 4e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019500 [exp] 202 / 9e-67 AT4G16380 78 / 7e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G020000 [exp] 164 / 2e-52 AT4G16380 68 / 2e-14 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019600 [exp] 149 / 5e-46 AT4G16380 69 / 3e-14 Heavy metal transport/detoxification superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039073 [exp] 104 / 3e-28 AT4G16380 103 / 2e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10038786 [exp] 104 / 6e-28 AT1G49420 108 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10001913 [exp] 64 / 4e-12 AT4G16380 90 / 1e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10000039 [exp] 62 / 5e-12 AT4G16380 81 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G018400.1 pacid=42768511 polypeptide=Potri.006G018400.1.p locus=Potri.006G018400 ID=Potri.006G018400.1.v4.1 annot-version=v4.1 ATGGTGGAAACGAAAGTCACAACGATGGTGATCAAGGTGGTTGACCTTGGATGCGAAAAATGCCACAAGAAAATCAAGAAAGTACTGTGTGGTATCCCTC AAATCCAGAACCAGATATATGACAAGAAGGAAAACACAGTGACAATCACTGTGGTGTGTTGCAGTCCTGAAAAGATCAAGAAAAAAATATACTGCAAAGG AGGTGAAGCTGTCAAGTGCATTGAGATCAAGCTGCCTCCACCTCCACCTCCACCTTCACCACCACCTCCACCTCCACCTCCACCTCCACCTCCACCTTCA CCACCACCATCACCACCTCCATCACCACCTCCATCACCACCTCCACCACCATGCACATGCACATGTTGTGAAAAATGCCGCCGAGGCCCATGTTGTCATC ACTTTTGTATGCCAATAGTACCTCCATATTTTCATGTACCTTGTAGATGGTCAGAGTGTGATCTATGGGGAGATGGTTGTTGTAGTTGCCGAAGTAGGGG TTACTATGTGTGCAGAAGTGCATATGTTTATGAAGAGTACTACTATCCCCCGACATGCAAATGA
AA sequence Show only first row Show all	>Potri.006G018400.1 pacid=42768511 polypeptide=Potri.006G018400.1.p locus=Potri.006G018400 ID=Potri.006G018400.1.v4.1 annot-version=v4.1 MVETKVTTMVIKVVDLGCEKCHKKIKKVLCGIPQIQNQIYDKKENTVTITVVCCSPEKIKKKIYCKGGEAVKCIEIKLPPPPPPPSPPPPPPPPPPPPPS PPPSPPPSPPPSPPPPPCTCTCCEKCRRGPCCHHFCMPIVPPYFHVPCRWSECDLWGDGCCSCRSRGYYVCRSAYVYEEYYYPPTCK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G018400 [exp]	0	1
					Potri.001G387000 [exp]	2.44	0.8581
AT1G53163			unknown protein		Potri.011G116600 [exp]	3.16	0.9006
AT3G18670			Ankyrin repeat family protein ...		Potri.004G003600 [exp]	5.83	0.8779
AT2G26600			Glycosyl hydrolase superfamily...		Potri.006G067500 [exp]	12.64	0.7972
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162500 [exp]	14.07	0.8023	PME2.16
					Potri.016G011250 [exp]	14.69	0.8004
AT5G45540			Protein of unknown function (D...		Potri.006G010900 [exp]	17.02	0.8308
AT3G12410			Polynucleotidyl transferase, r...		Potri.006G031400 [exp]	18.97	0.7379
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.002G227600 [exp]	23.23	0.8292
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.015G077100 [exp]	23.32	0.8214

Compare expression of checked genes

Potri.006G018400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.