Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16380 78 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G51090 65 / 4e-13 Heavy metal transport/detoxification superfamily protein (.1) AT1G49420 63 / 3e-12 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G019500 [exp] 117 / 3e-33 AT4G16380 78 / 7e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018901 [exp] 116 / 6e-33 AT4G16380 81 / 1e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019400 [exp] 114 / 6e-32 AT4G16380 79 / 4e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019800 [exp] 111 / 8e-31 AT4G16380 82 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018400 [exp] 110 / 1e-30 AT4G16380 81 / 9e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G020100 [exp] 109 / 4e-30 AT4G16380 76 / 7e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G020500 [exp] 107 / 4e-29 AT4G16380 73 / 9e-16 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019200 [exp] 103 / 1e-27 AT4G16380 86 / 3e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G020300 [exp] 102 / 4e-27 AT4G16380 70 / 1e-14 Heavy metal transport/detoxification superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038786 [exp] 96 / 3e-24 AT1G49420 108 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10039073 [exp] 94 / 5e-24 AT4G16380 103 / 2e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10000039 [exp] 57 / 5e-10 AT4G16380 81 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10001913 [exp] 54 / 2e-08 AT4G16380 90 / 1e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10019789 [exp] 40 / 0.0004 AT4G38580 254 / 4e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10014120 [exp] 40 / 0.0004 AT4G38580 253 / 5e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G018500.1 pacid=42767846 polypeptide=Potri.006G018500.1.p locus=Potri.006G018500 ID=Potri.006G018500.1.v4.1 annot-version=v4.1 ATGGTAGAAACGCAAGTCACAACGATGGTGATTAAGGTTGACCTTGGATGCGAAAAATGCCACAAGAAAATCAAGAAAGTACTGTGTGGTATTCCTCAAA TTCAGAACCAGACATTTGACAAGAAGGCAAACACAGTAACAATCACTGTGGTGTGTTGCTGTCCTGAAAAGATCATGAAAAAAATACACTGCAAAGAGGT CGAACTGTCAAGTGCATTCAGATCAAGCCTCCGAAGGATCCTAAACCACCACAGGATCCTAAACCACCACAGGATCCTAAACCACCAAAGGATCCTAAAC CACTACAGGATCCTAAACCACCAGAGGATCCTAAACTACCAGAACCACACCGATGCACATGTTGTGAAAAATGCCGCCAAGGCCCATGTTGTCATCACTT TTGTATGCCAACAGTACCTCCATATTGTCATGTACCTTGTAGAAGGTCAGAGTGTGATATATGGGGAGATGGTTGTTGTAGTTGCCGAAGTAGGGGTTAC TATGTGTGCAGAAGTTTATATGTTTATGAAGAGTACTACTATCCCCCGACATGCAGAATCATGTAAAGGGAAATCAAGTTCAGAAGACCGATGA
AA sequence Show only first row Show all	>Potri.006G018500.1 pacid=42767846 polypeptide=Potri.006G018500.1.p locus=Potri.006G018500 ID=Potri.006G018500.1.v4.1 annot-version=v4.1 MVETQVTTMVIKVDLGCEKCHKKIKKVLCGIPQIQNQTFDKKANTVTITVVCCCPEKIMKKIHCKEVELSSAFRSSLRRILNHHRILNHHRILNHQRILN HYRILNHQRILNYQNHTDAHVVKNAAKAHVVITFVCQQYLHIVMYLVEGQSVIYGEMVVVVAEVGVTMCAEVYMFMKSTTIPRHAESCKGKSSSEDR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G018500 [exp]	0	1
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019100 [exp]	1.00	0.8390
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.006G107200 [exp]	3.16	0.7979
AT5G41761			unknown protein		Potri.012G031900 [exp]	7.74	0.7211
AT5G06730			Peroxidase superfamily protein...		Potri.001G012901 [exp]	7.93	0.7646
AT5G24580			Heavy metal transport/detoxifi...		Potri.015G003900 [exp]	9.21	0.7545
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011000 [exp]	10.67	0.7531
					Potri.006G037801 [exp]	12.00	0.7596
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Potri.003G219300 [exp]	13.26	0.6796
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.004G182000 [exp]	13.56	0.7435	CHIA5.3
AT3G14130			Aldolase-type TIM barrel famil...		Potri.003G069300 [exp]	16.70	0.7356

Compare expression of checked genes

Potri.006G018500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.