Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16390 818 / 0 SVR7 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) AT5G46580 416 / 2e-136 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G31400 167 / 2e-43 GUN1 genomes uncoupled 1 (.1) AT1G18900 159 / 9e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G74750 152 / 3e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 134 / 2e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62914 132 / 2e-32 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62590 130 / 1e-31 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62910 130 / 1e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 129 / 2e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G019000 [exp] 1217 / 0 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G006800 [exp] 1078 / 0 AT4G16390 916 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G089600 [exp] 418 / 3e-137 AT5G46580 986 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.014G118500 [exp] 167 / 2e-43 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.002G193900 [exp] 163 / 4e-42 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.015G066400 [exp] 153 / 1e-38 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.006G166200 [exp] 145 / 4e-36 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 142 / 7e-35 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.013G130600 [exp] 136 / 6e-34 AT1G12700 330 / 3e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038788 [exp] 743 / 0 AT4G16390 802 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039071 [exp] 741 / 0 AT4G16390 808 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10004555 [exp] 403 / 4e-131 AT5G46580 960 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000897 [exp] 394 / 1e-127 AT5G46580 945 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10022290 [exp] 160 / 2e-41 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10003657 [exp] 157 / 2e-40 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10033110 [exp] 149 / 3e-37 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10003424 [exp] 147 / 9e-37 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10026884 [exp] 143 / 1e-35 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1) Lus10013894 [exp] 143 / 3e-35 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G018600.1 pacid=42769438 polypeptide=Potri.006G018633.1.p locus=Potri.006G018600 ID=Potri.006G018600.1.v4.1 annot-version=v4.1 ATGGCATACAACCTCTGCTCCTCACCTTCTTCTCTCTATAAACCTCTCTGCAACACTCCTTCATCTTCTTCAAGAGACTCAAAATCAAGAAACCTAAACA ACAACTTCGACCATTCTTCGAAGATAAACACTCTCTCTTCTCAATCAAGAGCAACCTCTCTTCAAATAACCAATGTCTCATTGCAAGACGAAGAAATACC ACGACAAGAAACCTCAAAAGATTCAAACTTTAAGGAAAAAACTGGGTCTTCTTCAAAATCTTACATCTGGGTCAACCCCAAAAGCTCTAGAGCTTCAATT CTCAGAAAACGTTCCTACGATGCTAAGTATACTTCACTTGTTAATGCAGCGAAGTATCTGAATTCTTGTAGCCCAAATAAAGATGATGTCCTTGATGTTT TGAGTGAATTTGATGTTTTTTCAAGAGAGGTTGTTGTTTACAATGTGACTTTGAAAGTTTTTAGGAAAGCAAGAGATTTGGATAAAGCCGAGAAGTTGTT CGATGAGATGCTTGAGAGAGGTGTTAAGCCTGATAATTTTACGTTTTCGACAATAATTAGTTGTGCTAGGTTGTGTAATTTAGCTGATAAGGCAGTTGAG TGGTTTGAGAAAATGCCGAGTTTTGGGCTTGAACCTGACGATGTTACCTTTTCGACTATGATTGATTCGTATGGGCGGGCTGGTAATGTTGAAAAGGCAT TGAGCTTGTATGACCGTGCTAGAACGGGGGAGTGGCGGCTAGATGCAACGCCGTTCTCTACATTGATTAGGATTTATAAGGTTGCTAGGAATTTTGATGG GTGTTTGAATTTTTATGAAGAAATGAAGGCTTTAGGTGTTAAGCCAAACCTGGTCATATACAAAATTTTGTTAGATGACATGGGAAGAGCCAAGAGGCCT TGGCAGGTGAAGAAATTCTATCAGGATATAATTGACAATGGGTTGTCACCAAGTTTTGTGACATATGCAGCTCTTCTGCATGCGAAAAGGGGTTTGGGAT TGAATGTAGTTCTTTATAATTCCATATTGGCTATGTGTGCTGATCTTGGCCACGTGGATAAAGCTGTTGAGATTTTTGAGGACATGAAGAGTTCTGGAAT CAAGCCTGATAGTTGGACTTTCTCATCCATGATTACCATTTTCTCATGCTGTGGGAAAGTTTCTGAGGCAGAGAATACGTTGAATGAGATGTTCGAAGCA GGCTTTCAGCCAAATATTTTTATCTTGACATCACTTATCCAGTGCTATGGAAAAGCCCAACGCATTGATGATGTTGTGAAGACATTTAACCGAATTTTTG ATTGGGTTATAACTCCAGATGATCGGTTCTGTGGCTGTCTTCTGAATGTGATGACTCAAACACCAAATGAAGAGCTCAGCAAGCTTGTTAAATGTGTTGA GAGGGCTAATCCGAAGCTTGGTTATGTGGTTAAACTTTTGGTAGAGGAGCAAGACAGTGAGGGGAATTTTAAGAACGAAGCTACTGACCTGTTTGATAGT ATTAGCACTGAAGTAAAGAAAGCTTACTGCAATTGCTTAATTGACCTCTGTATCAAGCTCAATATGTTGGAGAGATCTTGGGAGTTGCTTGACCTTGGAT TGACACTTGAAATTTACACCAATATAATGTCCAGAACTTCAACCCAGTGGTCCCTAAATCTAAAGAGTCTCTCCCCCGGGGCAGCTCTGACAGCATTACA TATTTGGATGAATGACTTGTCCAAGGTACTGGAGGCAGGGGAGCAACTTCCACCATTGCTTGGAATGAATACTGGGCATGGGAAACGTAAGTATTCTGAG AAAGGTTTAGCCAATGTGTTGGAGTCATATTTGAAGGAACTAAATTCTCCATTTCATGAGGCTCCTGATAAGGTTGGCTGGTTCTTAACTACGAAGGTTG CAGCTGAGTCATGGTTGGAATCTAGAAAATCAACTGACGCAGTAGCTGCTTAG
AA sequence Show only first row Show all	>Potri.006G018600.1 pacid=42769438 polypeptide=Potri.006G018633.1.p locus=Potri.006G018600 ID=Potri.006G018600.1.v4.1 annot-version=v4.1 MAYNLCSSPSSLYKPLCNTPSSSSRDSKSRNLNNNFDHSSKINTLSSQSRATSLQITNVSLQDEEIPRQETSKDSNFKEKTGSSSKSYIWVNPKSSRASI LRKRSYDAKYTSLVNAAKYLNSCSPNKDDVLDVLSEFDVFSREVVVYNVTLKVFRKARDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKAVE WFEKMPSFGLEPDDVTFSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATPFSTLIRIYKVARNFDGCLNFYEEMKALGVKPNLVIYKILLDDMGRAKRP WQVKKFYQDIIDNGLSPSFVTYAALLHAKRGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEA GFQPNIFILTSLIQCYGKAQRIDDVVKTFNRIFDWVITPDDRFCGCLLNVMTQTPNEELSKLVKCVERANPKLGYVVKLLVEEQDSEGNFKNEATDLFDS ISTEVKKAYCNCLIDLCIKLNMLERSWELLDLGLTLEIYTNIMSRTSTQWSLNLKSLSPGAALTALHIWMNDLSKVLEAGEQLPPLLGMNTGHGKRKYSE KGLANVLESYLKELNSPFHEAPDKVGWFLTTKVAAESWLESRKSTDAVAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.006G018600 [exp]	0	1
AT4G30700			Pentatricopeptide repeat (PPR)...		Potri.016G077700 [exp]	2.44	0.8505
AT5G48385			FRIGIDA-like protein (.1)		Potri.007G050800 [exp]	7.41	0.7341
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.017G048200 [exp]	25.21	0.8043
AT5G53490			Tetratricopeptide repeat (TPR)...		Potri.012G018100 [exp]	34.58	0.7664
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Potri.011G104400 [exp]	34.64	0.7663
AT1G78560			Sodium Bile acid symporter fam...		Potri.003G008700 [exp]	36.33	0.7669
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Potri.001G253700 [exp]	36.87	0.7982
ATCG00350		ATCG00350.1, PS...	Photosystem I, PsaA/PsaB prote...		Potri.007G061601 [exp]	38.34	0.7671
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G027400 [exp]	38.96	0.7465
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.016G029700 [exp]	39.83	0.7225

Compare expression of checked genes

Potri.006G018600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.