Plant FIBer expression Database

Potri.006G018901 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16380 81 / 8e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
AT1G49420 70 / 4e-15 Heavy metal transport/detoxification superfamily protein (.1)
AT1G51090 64 / 4e-13 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G018400
[exp]
281 / 3e-98 AT4G16380 81 / 9e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G019800
[exp]
233 / 5e-79 AT4G16380 82 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G020100
[exp]
225 / 3e-76 AT4G16380 76 / 7e-17 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G019700
[exp]
225 / 4e-76 AT4G16380 76 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G020500
[exp]
219 / 2e-73 AT4G16380 73 / 9e-16 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G019400
[exp]
218 / 2e-73 AT4G16380 79 / 4e-18 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G019500
[exp]
207 / 5e-69 AT4G16380 78 / 7e-18 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G020000
[exp]
171 / 4e-55 AT4G16380 68 / 2e-14 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G019600
[exp]
155 / 2e-48 AT4G16380 69 / 3e-14 Heavy metal transport/detoxification superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039073
[exp]
103 / 4e-28 AT4G16380 103 / 2e-27 Heavy metal transport/detoxification superfamily protein (.1.2)
Lus10038786
[exp]
103 / 8e-28 AT1G49420 108 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1)
Lus10001913
[exp]
63 / 6e-12 AT4G16380 90 / 1e-21 Heavy metal transport/detoxification superfamily protein (.1.2)
Lus10000039
[exp]
61 / 1e-11 AT4G16380 81 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.006G018901.2 pacid=42766907 polypeptide=Potri.006G018901.2.p locus=Potri.006G018901 ID=Potri.006G018901.2.v4.1 annot-version=v4.1
ATGGTAGAAACGAAAGTCACAACGATGGTGATTAAGGTGGTTGACCTTGGATGCGAAAAATGCCACAAGAAAATCAAGAAAGTACTGTGTGGTATCCCTC
AAATCCAGAACCAGATATATGACAAGAAGGCAAATACAGTGACAATCTCTGTGGTGTGTTGCTGTCCTGAAAAGATTAAGAAAAAAATATACTGCAAAGG
AGGTGAAGCTGTCAAGTGCATTGAGATCAAGCTGCCATCACCTCCACCTCCACCTCCTCCACCTCCTCCACCTCCACCTCCACCTCCACCTCCACCACCA
CCACCACCACCTCCACCACCATGCACATGCACATGTTGTGAAAAATGCCGCCGAGGCCCATGTTGTCATCACTTTTGTATGCCAACAGTACCTCCATATT
TTCATGTACCTTGTAGATGGTCAGAGTGTGATCTATGGGGAGATGGTTGTTGTAGTTGCCGAAGTAGGGGTTACTATGTGTGCAGAAGTGCATATGTTTA
TGAAGAGTACTACTATCCCCCGACATGCAAATGA
AA sequence
>Potri.006G018901.2 pacid=42766907 polypeptide=Potri.006G018901.2.p locus=Potri.006G018901 ID=Potri.006G018901.2.v4.1 annot-version=v4.1
MVETKVTTMVIKVVDLGCEKCHKKIKKVLCGIPQIQNQIYDKKANTVTISVVCCCPEKIKKKIYCKGGEAVKCIEIKLPSPPPPPPPPPPPPPPPPPPPP
PPPPPPPCTCTCCEKCRRGPCCHHFCMPTVPPYFHVPCRWSECDLWGDGCCSCRSRGYYVCRSAYVYEEYYYPPTCK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16380 Heavy metal transport/detoxifi... Potri.006G018901
[exp]
0 1
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.002G128000
[exp]
2.00 0.9605
Potri.001G259204
[exp]
2.23 0.9539
Potri.007G113900
[exp]
5.65 0.9579
Potri.017G046800
[exp]
7.54 0.9553
AT1G73165 CLE1 CLAVATA3/ESR-RELATED 1 (.1) Potri.011G096800
[exp]
9.16 0.9468
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Potri.016G118500
[exp]
9.53 0.9527
Potri.007G114200
[exp]
10.09 0.9538
AT1G26560 BGLU40 beta glucosidase 40 (.1) Potri.010G159900
[exp]
10.58 0.9514 HIUHASE.2
AT2G15490 UGT73B4 UDP-glycosyltransferase 73B4 (... Potri.009G098400
[exp]
11.00 0.9476
AT3G53830 Regulator of chromosome conden... Potri.006G089901
[exp]
15.09 0.9399

Potri.006G018901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.