Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16380 58 / 1e-09 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G49420 45 / 2e-05 Heavy metal transport/detoxification superfamily protein (.1) AT1G51090 40 / 0.0005 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G019300 [exp] 111 / 6e-29 AT4G16380 94 / 1e-22 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019200 [exp] 99 / 8e-25 AT4G16380 86 / 3e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G006700 [exp] 79 / 3e-17 AT4G16380 45 / 2e-05 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018400 [exp] 69 / 7e-14 AT4G16380 81 / 9e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018901 [exp] 68 / 2e-13 AT4G16380 81 / 1e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018500 [exp] 64 / 6e-12 AT4G16380 77 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019800 [exp] 62 / 2e-11 AT4G16380 82 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019400 [exp] 62 / 2e-11 AT4G16380 79 / 4e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019500 [exp] 61 / 7e-11 AT4G16380 78 / 7e-18 Heavy metal transport/detoxification superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039073 [exp] 66 / 1e-12 AT4G16380 103 / 2e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10038786 [exp] 65 / 3e-12 AT1G49420 108 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10001913 [exp] 60 / 4e-10 AT4G16380 90 / 1e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10000039 [exp] 49 / 9e-07 AT4G16380 81 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G019100.1 pacid=42768443 polypeptide=Potri.006G019100.1.p locus=Potri.006G019100 ID=Potri.006G019100.1.v4.1 annot-version=v4.1 ATGGCTGAAAAGAAAGTCACAATAATGGTGATCAAGGTTGACCTTGAATGTAAGAAATGCCACAAGAAAATCAAGAAAGTACTGTGTAGAATCCCTCAAA TTCAGAACCAGATATATGACAAGAAGGCAGGCACAGTGACCATCACTGTGGTATGTTGCAGTCCTGAAAAGATCAAGGAAAAGATAATCTGTAAAGGAGG TGAAGCTGTCCAGAGCATTGAGATCAAGGTTCCAGAGAAACCCAAAGCACCACCATCTAAACCTAAAGAACCGGAGAAGCCGAAAGAACCTGAAAAGCCT AAGCAACCGGAGAATCCCAAAGAACCGGAGAAGCCCAAAGAACCAGAGAAACCCAAAGAACCGGAGAAACCCAAAGAACCAGAGAAACCCAAAGAACCAG AGAAACCGGCACCAGTCCACCGAAGGACATGTTGTGCTGAATGCTACCATGGGATTAGTGGAGGCCCATGTTATCATGACCATAGGAGGCCAGCACCCTT CCTAATCCCAGCTCCAAACCCGGCACCACCACCTAAAGCTCCGGAACCAGTCCACCCAAGGACATGTTGTGATGAATGCTACCATGGGATTAGTGGAGGC CCGTGTTATCATGACTATAGGAGGCCAGCACCCGCCCCAATCCCAGCTCCAAACCCGACACGACCACCACCACCTAAAGCTCCGGAACCAGTCCACCCAA GGACATGTTGTGCTGAATGCTACCATGGGATTAGTGGAGGCCCGTGTTATCATGACAATGCTAGGCCAGCACCCCCATGTTATGAAGCTTATGGAAGGCC AGTGTATGATAGTTGGGCTGGCAGCGGCGGCGGCTGTGGTTGCCAAAGAAGCGGTTACTATGTGTGCAGATGTGAATATGTCTGTGAAGATAATCCCTCG TCATGCACAATCATGTGA
AA sequence Show only first row Show all	>Potri.006G019100.1 pacid=42768443 polypeptide=Potri.006G019100.1.p locus=Potri.006G019100 ID=Potri.006G019100.1.v4.1 annot-version=v4.1 MAEKKVTIMVIKVDLECKKCHKKIKKVLCRIPQIQNQIYDKKAGTVTITVVCCSPEKIKEKIICKGGEAVQSIEIKVPEKPKAPPSKPKEPEKPKEPEKP KQPENPKEPEKPKEPEKPKEPEKPKEPEKPKEPEKPAPVHRRTCCAECYHGISGGPCYHDHRRPAPFLIPAPNPAPPPKAPEPVHPRTCCDECYHGISGG PCYHDYRRPAPAPIPAPNPTRPPPPKAPEPVHPRTCCAECYHGISGGPCYHDNARPAPPCYEAYGRPVYDSWAGSGGGCGCQRSGYYVCRCEYVCEDNPS SCTIM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019100 [exp]	0	1
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G018500 [exp]	1.00	0.8390
AT5G66390			Peroxidase superfamily protein...		Potri.005G118700 [exp]	5.19	0.7752
AT1G79420			Protein of unknown function (D...		Potri.008G081700 [exp]	6.70	0.7180
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.001G364900 [exp]	9.48	0.7307
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.001G048200 [exp]	9.48	0.7460
AT3G63430			unknown protein		Potri.005G216300 [exp]	9.48	0.7363
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G018766 [exp]	10.58	0.7738
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.006G107200 [exp]	10.58	0.7451
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.013G028000 [exp]	14.69	0.7258
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003600 [exp]	15.42	0.7190

Compare expression of checked genes

Potri.006G019100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.