Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16380 79 / 5e-18 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G49420 67 / 3e-14 Heavy metal transport/detoxification superfamily protein (.1) AT1G51090 62 / 2e-12 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G019800 [exp] 242 / 1e-82 AT4G16380 82 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G020100 [exp] 232 / 6e-79 AT4G16380 76 / 7e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019400 [exp] 228 / 3e-77 AT4G16380 79 / 4e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G020500 [exp] 225 / 8e-76 AT4G16380 73 / 9e-16 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019700 [exp] 216 / 1e-72 AT4G16380 76 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018901 [exp] 197 / 3e-65 AT4G16380 81 / 1e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018400 [exp] 192 / 4e-63 AT4G16380 81 / 9e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019600 [exp] 184 / 7e-60 AT4G16380 69 / 3e-14 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G020000 [exp] 171 / 5e-55 AT4G16380 68 / 2e-14 Heavy metal transport/detoxification superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039073 [exp] 100 / 1e-26 AT4G16380 103 / 2e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10038786 [exp] 100 / 2e-26 AT1G49420 108 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10001913 [exp] 59 / 1e-10 AT4G16380 90 / 1e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10000039 [exp] 56 / 3e-10 AT4G16380 81 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G019500.1 pacid=42767486 polypeptide=Potri.006G019500.1.p locus=Potri.006G019500 ID=Potri.006G019500.1.v4.1 annot-version=v4.1 ATGGTGGAAACGAAAGTCACAACGATGGTGATCAAGGTGGTTGACCTTGGATGCGAAAAATGCCACAAGAAAATCAAGAAAGTACTGTGTGGTATCCCTC AAATCCAGAACCAGACATATGACAAGAAGGAAAACACAGTAACAATCACTGTGGTGTGTTGCTGTCCTGAAAAGATCAAGAAAAAAATATACTGCAAAGG AGGTCGAACTGTCAAGTGCGTTGAGATCAAGCCGCCTCCGAAACCAAAACCAGAACCAAAACCAGAAACAAAACCAGAACCAAAACCAAAACCAGAACCA AAACCAGAACCATGCCCATGTTGTGAAAAATGCCGCCGAGGCCCATGTTGTCATCACTATTGCATGCCAACAGTACCTCCATATTGTCCTGTACCTTGTA GAAGGGCGGTGTGTGATATATGGGAAGACGGTTGTTGTAGTTGCCGAAGTAGGGGTTACTATCTGTGCAGAAGTGCATATGTTTGTGAAGAGTACTATCC CTCGGCGCCATGCACAATCATGTAA
AA sequence Show only first row Show all	>Potri.006G019500.1 pacid=42767486 polypeptide=Potri.006G019500.1.p locus=Potri.006G019500 ID=Potri.006G019500.1.v4.1 annot-version=v4.1 MVETKVTTMVIKVVDLGCEKCHKKIKKVLCGIPQIQNQTYDKKENTVTITVVCCCPEKIKKKIYCKGGRTVKCVEIKPPPKPKPEPKPETKPEPKPKPEP KPEPCPCCEKCRRGPCCHHYCMPTVPPYCPVPCRRAVCDIWEDGCCSCRSRGYYLCRSAYVCEEYYPSAPCTIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019500 [exp]	0	1
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019600 [exp]	1.00	0.9136
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.012G113100 [exp]	4.89	0.8809
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.019G013750 [exp]	5.29	0.8606
					Potri.001G042200 [exp]	5.91	0.8469
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G010101 [exp]	13.41	0.8404
					Potri.012G121504 [exp]	14.38	0.8320
AT2G22860		ATPSK2	phytosulfokine 2 precursor (.1...		Potri.002G116300 [exp]	15.23	0.8325
					Potri.010G125900 [exp]	18.02	0.7693
AT3G58480			calmodulin-binding family prot...		Potri.015G125950 [exp]	18.97	0.7696
AT4G39955			alpha/beta-Hydrolases superfam...		Potri.005G074066 [exp]	26.83	0.7749

Compare expression of checked genes

Potri.006G019500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.