Plant FIBer expression Database

Potri.006G019550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G019550.3 pacid=42768578 polypeptide=Potri.006G019550.3.p locus=Potri.006G019550 ID=Potri.006G019550.3.v4.1 annot-version=v4.1
ATGGACCAAATCAACAAAAACAGAGGCAGAATCAGAGCAAAAACAAAGCAAAGAACCCGAGAAAGCTTGGGTCCTGCCAACCCCCGGTTCCAGGACCCTT
ACCATCAAAGTATTTGTCCAGAGTGGGGGAATTCAAAAGCACAGACCAAAAGCTTTCTTCCCGAACACAAAGAGCAAATAAAAAAAAGGCAAAGAGACAG
AGCAGAGAAGGAAAGAAAAACAGAGGGGCAACCATTTCGTGCCTGCAGAAAAAGAACCCAAAAGACAGTGGAGCCACACCGGGAAACAAAAGAAAACAGC
CACTGCGCCATCGTCTTCGGCGCCGTCCTCCGCTGCACAGGTAAGTTTCCATTCTCTGCATTCAATAAAACTTTCAAATGCAGTATGAAGGTAATTTAG
AA sequence
>Potri.006G019550.3 pacid=42768578 polypeptide=Potri.006G019550.3.p locus=Potri.006G019550 ID=Potri.006G019550.3.v4.1 annot-version=v4.1
MDQINKNRGRIRAKTKQRTRESLGPANPRFQDPYHQSICPEWGNSKAQTKSFLPEHKEQIKKRQRDRAEKERKTEGQPFRACRKRTQKTVEPHRETKENS
HCAIVFGAVLRCTGKFPFSAFNKTFKCSMKVI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G019550
[exp]
0 1
AT1G47750 PEX11A peroxin 11A (.1) Potri.002G134000
[exp]
10.58 0.7368
AT2G17030 F-box family protein with a do... Potri.001G277400
[exp]
12.64 0.7206
AT1G26690 emp24/gp25L/p24 family/GOLD fa... Potri.004G127200
[exp]
13.96 0.7333
AT1G47578 Biotin/lipoate A/B protein lig... Potri.002G131000
[exp]
24.49 0.6925
AT5G18140 Chaperone DnaJ-domain superfam... Potri.019G035100
[exp]
29.98 0.6738
AT5G20900 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 1... Potri.006G217200
[exp]
39.24 0.6916
AT1G76560 CP12-3 CP12 domain-containing protein... Potri.002G002700
[exp]
45.27 0.6629
AT1G64200 VHA-E3 vacuolar H+-ATPase subunit E i... Potri.016G139800
[exp]
51.69 0.6878
AT3G15820 ROD1 REDUCED OLEATE DESATURATION 1,... Potri.003G032200
[exp]
53.44 0.6474
AT3G28360 ABCB16, PGP16 ATP-binding cassette B16, P-gl... Potri.001G417801
[exp]
54.69 0.6806

Potri.006G019550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.