Plant FIBer expression Database

Potri.006G019800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16380 82 / 4e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
AT1G49420 70 / 5e-15 Heavy metal transport/detoxification superfamily protein (.1)
AT1G51090 64 / 9e-13 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G020300
[exp]
255 / 2e-87 AT4G16380 70 / 1e-14 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G019500
[exp]
250 / 1e-85 AT4G16380 78 / 7e-18 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G019400
[exp]
234 / 4e-79 AT4G16380 79 / 4e-18 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G020100
[exp]
231 / 5e-78 AT4G16380 76 / 7e-17 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G020500
[exp]
231 / 5e-78 AT4G16380 73 / 9e-16 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G019700
[exp]
221 / 2e-74 AT4G16380 76 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G018901
[exp]
204 / 1e-67 AT4G16380 81 / 1e-18 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G018400
[exp]
199 / 3e-65 AT4G16380 81 / 9e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
Potri.006G019600
[exp]
129 / 4e-38 AT4G16380 69 / 3e-14 Heavy metal transport/detoxification superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039073
[exp]
96 / 9e-25 AT4G16380 103 / 2e-27 Heavy metal transport/detoxification superfamily protein (.1.2)
Lus10038786
[exp]
96 / 2e-24 AT1G49420 108 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1)
Lus10001913
[exp]
55 / 3e-09 AT4G16380 90 / 1e-21 Heavy metal transport/detoxification superfamily protein (.1.2)
Lus10000039
[exp]
54 / 6e-09 AT4G16380 81 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00403 HMA Heavy-metal-associated domain
Representative CDS sequence
>Potri.006G019800.1 pacid=42769010 polypeptide=Potri.006G019800.1.p locus=Potri.006G019800 ID=Potri.006G019800.1.v4.1 annot-version=v4.1
ATGGTAGAAACGAAAGTCACAACGATGGAGATTAAGGTGGTTGACCTAGGATGCGAAAAATGCCACAAGAAAATCAAGAGAGTACTGTGTGCTATCCCTC
AAATCCAGAACCAGACATATGACAAGAAGGCAAACACAGTGACAATCACTGTGGTGTGTTGCTGTCCTGAAAAGATCAAGAAAAAAATATACAGCAAAGG
AGGTCGAACTGTCAAGTGCGTTGAGATCAAGCCGCCTCCGAAGCCAAAATCAGAAACAAAACCAGAATCAGAAACAAAACCAGAAACAAAACCAGAATCA
GAAACAAAACCAGAAACAAAAACACAAACACAAACAGAACCAGAAACAAAACAAGAACCAAAACCATGCACATGTTGTGAAAAATGCCGCCGAGGCCCAT
GTTGTCATCACTTTTGTATGCCAACAGTACCTCCATATTGTCCTGTACCTTGTAGAAGGGCGGTGTGTGATATATGGGAAGACGGTTGTTGTAGTTGCCG
AAGTAGGGGTTACTATCTGTGCAGAAGTGCATATGTTTGTGAAGAGTACTACTATCCCTCGGCGCCATGCACAATCATGTAA
AA sequence
>Potri.006G019800.1 pacid=42769010 polypeptide=Potri.006G019800.1.p locus=Potri.006G019800 ID=Potri.006G019800.1.v4.1 annot-version=v4.1
MVETKVTTMEIKVVDLGCEKCHKKIKRVLCAIPQIQNQTYDKKANTVTITVVCCCPEKIKKKIYSKGGRTVKCVEIKPPPKPKSETKPESETKPETKPES
ETKPETKTQTQTEPETKQEPKPCTCCEKCRRGPCCHHFCMPTVPPYCPVPCRRAVCDIWEDGCCSCRSRGYYLCRSAYVCEEYYYPSAPCTIM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16380 Heavy metal transport/detoxifi... Potri.006G019800
[exp]
0 1
AT4G16380 Heavy metal transport/detoxifi... Potri.006G020300
[exp]
3.74 0.8821
AT4G16380 Heavy metal transport/detoxifi... Potri.006G020000
[exp]
4.00 0.9199
AT5G67400 RHS19 root hair specific 19 (.1) Potri.007G053400
[exp]
5.19 0.8622
AT1G74180 AtRLP14 receptor like protein 14 (.1) Potri.001G064600
[exp]
6.00 0.9088
AT4G16380 Heavy metal transport/detoxifi... Potri.006G020500
[exp]
6.48 0.8908
AT1G61120 TPS4, GES, TPS0... TERPENE SYNTHASE 4, GERANYLLIN... Potri.004G037900
[exp]
8.71 0.7763
AT2G40610 ATHEXPALPHA1.11... expansin A8 (.1) Potri.016G135200
[exp]
12.84 0.8439 PtEXPA13,EXP2.9
AT2G25470 AtRLP21 receptor like protein 21 (.1) Potri.018G144300
[exp]
18.97 0.8693
Potri.008G036000
[exp]
27.96 0.8254
Potri.001G076600
[exp]
28.28 0.8490

Potri.006G019800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.