Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15090 1079 / 0 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 795 / 0 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT1G76320 605 / 0 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT4G19990 543 / 0 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT2G32250 512 / 8e-170 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT4G38180 453 / 1e-147 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT2G27110 394 / 6e-124 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT1G52520 343 / 1e-106 FAR1_related FRS6 FAR1-related sequence 6 (.1) AT3G06250 320 / 4e-97 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT1G80010 317 / 2e-96 FAR1_related FRS8 FAR1-related sequence 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G020700 [exp] 867 / 0 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.016G018300 [exp] 856 / 0 AT3G22170 1139 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.003G110300 [exp] 845 / 0 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.003G207100 [exp] 680 / 0 AT1G76320 947 / 0.0 FAR1-related sequence 4 (.1.2) Potri.016G018100 [exp] 680 / 0 AT2G32250 793 / 0.0 FAR1-related sequence 2 (.1.2.3.4) Potri.004G209000 [exp] 461 / 2e-150 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.011G145800 [exp] 455 / 5e-148 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 446 / 6e-145 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.005G257600 [exp] 428 / 3e-138 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 463 / 2e-154 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10003810 [exp] 87 / 1e-17 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10010465 [exp] 82 / 8e-16 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10034360 [exp] 60 / 1e-08 AT3G02260 5990 / 0.0 UMBRELLA 1, TRANSPORT INHIBITOR RESPONSE 3, LOW PHOSPHATE-RESISTANT ROOT 1, DARK OVER-EXPRESSION OF CAB 1, CORYMBOSA1, ATTENUATED SHADE AVOIDANCE 1, auxin transport protein (BIG) (.1) Lus10023137 [exp] 45 / 4e-05 AT5G18960 46 / 3e-06 FAR1-related sequence 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.006G020600.1 pacid=42770026 polypeptide=Potri.006G020600.1.p locus=Potri.006G020600 ID=Potri.006G020600.1.v4.1 annot-version=v4.1 ATGATGACGGAGAGGAATCATAAAATGATTGATGATATGATCGATCTTCAAGATAATGTCCCTGCTGATGATGTAGTGGGTGGAAATATCGTTGGTGTGG TGGATGTGGTGCACAGTAGAGATGTTGCGGTCGTTGATTCTCCGAAAAGGGCTGTTGCTATGTTTGAAGGGGATGTAAACTATGAGCTATGTGATGGTAT TGAATTTGGATCACATGAGGAAGCATATTCGTTTTATCAGGAATATGCAAAATCTATGGGGTTCACCACTTCGATAAAGAATAGTAGGCGGTCAAAGAAA TCAAAGGAGTTTATTGATGCTAAATTTGCCTGTTCTAGATATGGAGTTACACCAGAGTCTGATAGTGGTAATAGTCGGCGATCAACTGTGAAGAAGACTG ATTGCAAAGCCAGTATGCATGTGAAGAGAAGGGCTGATGGCAAGTGGATAATACATGAATTTGTTAAGGAGCATAATCATGAGCTCTTACCTGCTCTAGC ATATCATTTTCGAATTCACAGGAATGTGAAATTAGCTGAAAAGAACAACATTGACATATTGCATGCTGTCAGTGAACGAACAAGAAAGATGTATGTCGAG ATGTCTCGACAGTCAGGTGGGTATCAAAATTTTGGGTTAGTAAAGAGCGAGATGAATATGCAGTTTGAAAAAGGCCAGCATTTGGCTCTTGATGAGGGTG ATGCACAAGTAGTGCTGGAATATTTTAAGCGTGTCAAGAAGGAGAATGCAAACTTCTTCTATGCAATAGATTTGAATGAAGAGCAGCGTCTGAGAAATTT GTTCTGGGTTGATGCAAAAAGCAGGGCAGATTATATTAGCTTTAATGATGCTGTTTGTTTCGAAACCTTCTATGTAAAATACCACGAGAAATTGCCATTT GCTCCTTTTGTTGGGGTGAATCATCACTGTCAGCCAATCTTACTCGGATGCGCATTTATTGCAGATGAGTCTAGATCAACATTTGTTTGGTTAATGAAAA CATGGCTTAGAGCAATGGGTGGGCAAGCACCTAAAGTTATAGTCACTGACGTGGACAAAACCTTGAAGGTGGCCATTGAAGAAGTCTTCCCAAACACCCG TCACTGCTTTTCTCTTTGGCATATATTAGAAAGATTGCCTGAAACTCTCTCTCATGTGATTAAACGACATGAGAATTTTTTGCCAAAATTCAACAAGTGC ATTTTCAAATCATGGACAGATGATCGGTTTGATATGAGGTGGTGGAAAATGGTCACCCGGTTCGAACTTCAAGATGATGAATGGATTCAGTCATTGTATG AAGATCGTAAAAAGTGGGTGCCTACCTACATGGGGGATACTTTTCTAGCCGGAACTTCTGCTACACAGCGTTCTGAAAGTATGAGTGCGTTCTTTGATAA ATACATTCATAGGAAAATCACCATGAAAGAGTTCATGAAACAATATGGAACAATTCTACAAAATAGGTATGAGGATGAGTCCGTTGCAGATTTTGATACT TCCCACAAACAGCCTGCCTTAAAATCTCCTTCTCCTTGGGAAAAACAAATGTCAATGGTTTATACTCATGCAATATTCAAGAAATTTCAAGTTGAGGTTT TAGGTGTAGTTGGCTGCCATCCTAAAAAGGAAAGTGAAGATGGAACATTGGTGACGTTTCGGGTTCAAGACTGTGAAAAGGATGAACATTTTTTGGTCAC ATGGAACCAAACAAATTCAGAGGTGTGCTGTTTCTGCCATTCCTTTGAATATAAAGGTTTTCTTTGTAGGCATGCATTGATTGTTCTCCAAATTTGTGGC CTTTCAAACATACCACCTCATTATATTCTGAAGAGGTGGACAAAAGACGCAAAGAGTAGGCAACCAATGGCCGTAGGAACAGAACGGGCACAAACTAGGG TGCAGCGCTACAATGATTTATGCAAATTGGCCATTGAAATGAGCGAAGAAGGATCATTATCTGAAGAGAGTTACAATATCGTTCTCCATACACTAGTAGA AGCTCTGAAGAATTGTGTGAATGTGAATAACTGCAATAACAGTGTAGCAGAATCTAGTACCTATACTCTGACTCATCGTGAAGCAGAAGAAGAAAACCAG GGAAGCCTTGTTACCAAATCAAGTAAAAAGAAGAACCCAGTCAGGAAAAGAAAGGTACAATCAGATCCAGACGTCATGCTTGTTGAAGCACCAGATAGCT TGCAGCAAATGGAAAATCTAAGCTCAGAAGGTATTAACCTTGGCGGATATTATGGTACCCAGCAGAATGTGCAAGGACTGGTACAGTTAAACTTAATGGA GCCGCCTCATGATGGTTACTATGTCAATCAACAGAGCATGCAGGGTCTGGGGCAGCTGAATTCCATAGCACCCAGTCATGATGGTTTTTTTGGGACTCAG CAAAGCTTGCATGGCTTGGGGCAATACGACTTTCGGCCTCCAACTGGTTTCAGTTATAGCATGCAGTTGCAGGATGACACTCATTTGAGATCTTCACATA TGCATGGCAGTGCTTCAAGACACGCATAA
AA sequence Show only first row Show all	>Potri.006G020600.1 pacid=42770026 polypeptide=Potri.006G020600.1.p locus=Potri.006G020600 ID=Potri.006G020600.1.v4.1 annot-version=v4.1 MMTERNHKMIDDMIDLQDNVPADDVVGGNIVGVVDVVHSRDVAVVDSPKRAVAMFEGDVNYELCDGIEFGSHEEAYSFYQEYAKSMGFTTSIKNSRRSKK SKEFIDAKFACSRYGVTPESDSGNSRRSTVKKTDCKASMHVKRRADGKWIIHEFVKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVE MSRQSGGYQNFGLVKSEMNMQFEKGQHLALDEGDAQVVLEYFKRVKKENANFFYAIDLNEEQRLRNLFWVDAKSRADYISFNDAVCFETFYVKYHEKLPF APFVGVNHHCQPILLGCAFIADESRSTFVWLMKTWLRAMGGQAPKVIVTDVDKTLKVAIEEVFPNTRHCFSLWHILERLPETLSHVIKRHENFLPKFNKC IFKSWTDDRFDMRWWKMVTRFELQDDEWIQSLYEDRKKWVPTYMGDTFLAGTSATQRSESMSAFFDKYIHRKITMKEFMKQYGTILQNRYEDESVADFDT SHKQPALKSPSPWEKQMSMVYTHAIFKKFQVEVLGVVGCHPKKESEDGTLVTFRVQDCEKDEHFLVTWNQTNSEVCCFCHSFEYKGFLCRHALIVLQICG LSNIPPHYILKRWTKDAKSRQPMAVGTERAQTRVQRYNDLCKLAIEMSEEGSLSEESYNIVLHTLVEALKNCVNVNNCNNSVAESSTYTLTHREAEEENQ GSLVTKSSKKKNPVRKRKVQSDPDVMLVEAPDSLQQMENLSSEGINLGGYYGTQQNVQGLVQLNLMEPPHDGYYVNQQSMQGLGQLNSIAPSHDGFFGTQ QSLHGLGQYDFRPPTGFSYSMQLQDDTHLRSSHMHGSASRHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	0	1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	2.44	0.8934
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	3.00	0.8795
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Potri.002G230800 [exp]	4.00	0.8542
AT5G50010	bHLH		sequence-specific DNA binding ...		Potri.002G103300 [exp]	4.69	0.8312
AT1G27595			unknown protein		Potri.002G107400 [exp]	6.00	0.8782
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	6.63	0.8831	TTN8.2
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.002G188700 [exp]	7.48	0.8572
AT4G09680		ATCTC1	conserved telomere maintenance...		Potri.002G129000 [exp]	7.54	0.8364
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.012G118500 [exp]	8.00	0.8195
AT5G53620			unknown protein		Potri.015G006700 [exp]	8.94	0.8390

Compare expression of checked genes

Potri.006G020600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.