Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15080 785 / 0 DHHC-type zinc finger family protein (.1) AT3G22180 706 / 0 DHHC-type zinc finger family protein (.1) AT1G69420 299 / 6e-92 DHHC-type zinc finger family protein (.1.2) AT2G33640 293 / 3e-90 DHHC-type zinc finger family protein (.1) AT4G01730 157 / 4e-41 DHHC-type zinc finger family protein (.1) AT5G04270 70 / 6e-13 DHHC-type zinc finger family protein (.1) AT3G09320 64 / 5e-11 DHHC-type zinc finger family protein (.1) AT3G26935 64 / 3e-10 DHHC-type zinc finger family protein (.1) AT4G24630 63 / 4e-10 DHHC-type zinc finger family protein (.1) AT2G40990 61 / 1e-09 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G018400 [exp] 1100 / 0 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G006900 [exp] 497 / 1e-167 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.008G091700 [exp] 314 / 2e-97 AT1G69420 626 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.010G163200 [exp] 308 / 5e-95 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.005G254366 [exp] 239 / 3e-73 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.014G112000 [exp] 224 / 5e-65 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 206 / 4e-58 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254432 [exp] 123 / 2e-30 AT2G33640 136 / 2e-35 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 67 / 2e-11 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039043 [exp] 836 / 0 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 817 / 0 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016036 [exp] 461 / 1e-153 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10025157 [exp] 316 / 7e-99 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1) Lus10037133 [exp] 293 / 9e-91 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10036798 [exp] 290 / 2e-88 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10026632 [exp] 244 / 2e-72 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10030426 [exp] 225 / 4e-65 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10038029 [exp] 218 / 2e-62 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 148 / 7e-38 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.006G020800.1 pacid=42767515 polypeptide=Potri.006G020800.1.p locus=Potri.006G020800 ID=Potri.006G020800.1.v4.1 annot-version=v4.1 ATGGTGAGGAAACATGGATGGCAACTACCAGCTCATACCTTTCAGGTTGTTGCAATCACTGTCTTCTGCTTACTAGTGATTGCATTTTATGCTTTCTTTG CTCCTTTCCTTGGAGGCAAAATCTGGGAGTATGTGCTTCTTGGGACTTACACTCCAGTGGTACTTCTTGTCTTTATTCTATATGTTCGGTGTACCGCAAT TAACCCTGCAGATCCTGGCATCATGTCTAAATTCAATTCCAATGTAGCAAATAAACTCAATGTGAAACATGGGTTTTCAGTGAAGGATCTGCCTAGAAAA TTTGATGAAACTGGAAGTGCTATGCATTCTTCGTTTTCATCACCCTCCAGAAGTTCTATAGGTCCAGCAAACTCTAGTAAGAAAGGGTCAGTGGGGGAAG TTGAGAGAGTCGAGACTGCTGTGCAATCTCCAACCAGAAAACCTTCCCATAACATCGGTTTAATCTTCTGTGCACCTTTTGTTCATGAAGATTGCCGCAA ACATGGAGAGATAGCTGACCAACAGGGCAATGGTGAAGATGCTTTGTTCTGTACATTGTGCAATGCTGAGGTACTCAAGTTCAGCAAACACTGTCGAAGT TGTGATAAATGTGTTGATGGTTTTGATCACCATTGCCGGTGGCTTAACAATTGTGTGGGGTATAAAAACTATGTGACTTTTATTTCTCTAATGGCTACTG GTCTTGCTTGGCTTGTACTCGAAGCTGGAGTTGGTATTGCTGTCTTTGTACGTTGTTTTGTTAACAAGCAAAGCATGAAGATTGAAATTGTCGAGACACT TGGAAATGGTTTCTCTATAGCTCCTTTTGCAACAGTTGTGGCTGTATGCACTGTAGTTTCTATCCTGGCTTGTGTACCTCTCAGTGAACTTTTCTTTTTC CACATGATATTGATCAGAAAGGGTATTACCACCTATGAGTATGTTGTGGCCATGAGAGCAATGAGTGAGGCACCTGCTGGAGCATCTGAGTATGAGGAAA TGCCAAATTTAGTATACTCTCCATCAGGATCTGCCACAACTGGCTTCAGTGGTGGAAGTTCTCTTGGCCTGCAGTACAAGGGAGCATGGTGCACCCCTCC TCGGGTATTTGTGGATTATCAGGATGAAGTCATACCTCACCTGGAGCCTGGTATGGTCCCATCAACTGTTGACCCAGATGCTGCTGGAGCTGCAGAAAGA GGTAGCAAGGTACCCAAACGGCCAGTTCGAATTAGTGCTTGGAAACTTGCGAAGTTAGATTCCACCGAGGCTATGAGAGCAGCAGCAAAGGCGAGGGCAT CTTCCTCTGTTCTAAAGCCAGTTGATAATCGCCGTTTACCCGATACTGAATGTAGCTCCAGTGGCAATATGAGTGTCAGAAGTAGTGTGAGCACTGATAT GGGGACAAACAAAGAGATCAAGAATGAGCCGAGACTAACAGCACTAGGAAACTCTTTTGCTCCAAGTCAAGGAAGCCGGGACGAGTATGAAACCGGGACT CAAAGTGTTAGTAGCTTCAGCAGCCCAAGCCATGTTCAAGAATCAGTCATGCTTAGTCCTCTACCACAAACTCAAGGTCTAGGTCGTTTTAATGCTGCAA CCTCAGCCCCTGGCCTTGTTCCTGATCATCCTGTAACTTCTAAGTCTCCTTTACCTACTGCCAACAACCCATTATCCCATCCTGCATCAGGATTTGATGA AAAAATCACGCAGAAGGGAAGTAGTACTGATCCATTGCTTCTTTCAGCTCCAGCTGCTTCTCTTCTTAGAGATGTCAAAAGGACGTCTGTTGTTTGGGAC CAAGAGGCTGGTAGGTATGTATCAGTTCCGTTGTCAGCTTCTGAAGCTCGGAATAGAACAGCTACACAAACTGTATTGCCAAAATCCAATGCAGAAACAA GCAATGATGGTCGAAAGCCAGCAATACCACCACAACAGTCATCATCATCATCAGCTAAAGCTCCTGCTCAGTCATCTGAGAAGCTCCTGTACACAGGGGA CTCCATTTTCTTTGGAGGTCCACTTTTGAGTGTCCCTGTTAGGGATAGTTTGAGAAATGAAGGAAGCTCAGGTTTGAGAGAGGGCCAACAGCGGTTTGCA TTGAATTTACCTCGAGAGTCTAGATTCAAAAGAGATTCAATATCAAACCAGCTTCCCGTGTTTGTCCCTGGGGGTTTTGATACCAACCCTTCTTCTGGTT CTGGTTTGAGGTAG
AA sequence Show only first row Show all	>Potri.006G020800.1 pacid=42767515 polypeptide=Potri.006G020800.1.p locus=Potri.006G020800 ID=Potri.006G020800.1.v4.1 annot-version=v4.1 MVRKHGWQLPAHTFQVVAITVFCLLVIAFYAFFAPFLGGKIWEYVLLGTYTPVVLLVFILYVRCTAINPADPGIMSKFNSNVANKLNVKHGFSVKDLPRK FDETGSAMHSSFSSPSRSSIGPANSSKKGSVGEVERVETAVQSPTRKPSHNIGLIFCAPFVHEDCRKHGEIADQQGNGEDALFCTLCNAEVLKFSKHCRS CDKCVDGFDHHCRWLNNCVGYKNYVTFISLMATGLAWLVLEAGVGIAVFVRCFVNKQSMKIEIVETLGNGFSIAPFATVVAVCTVVSILACVPLSELFFF HMILIRKGITTYEYVVAMRAMSEAPAGASEYEEMPNLVYSPSGSATTGFSGGSSLGLQYKGAWCTPPRVFVDYQDEVIPHLEPGMVPSTVDPDAAGAAER GSKVPKRPVRISAWKLAKLDSTEAMRAAAKARASSSVLKPVDNRRLPDTECSSSGNMSVRSSVSTDMGTNKEIKNEPRLTALGNSFAPSQGSRDEYETGT QSVSSFSSPSHVQESVMLSPLPQTQGLGRFNAATSAPGLVPDHPVTSKSPLPTANNPLSHPASGFDEKITQKGSSTDPLLLSAPAASLLRDVKRTSVVWD QEAGRYVSVPLSASEARNRTATQTVLPKSNAETSNDGRKPAIPPQQSSSSSAKAPAQSSEKLLYTGDSIFFGGPLLSVPVRDSLRNEGSSGLREGQQRFA LNLPRESRFKRDSISNQLPVFVPGGFDTNPSSGSGLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15080			DHHC-type zinc finger family p...		Potri.006G020800 [exp]	0	1
AT5G19670			Exostosin family protein (.1)		Potri.018G085400 [exp]	5.47	0.7637
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G034200 [exp]	8.83	0.6649
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Potri.005G083300 [exp]	10.09	0.7027
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.006G025900 [exp]	10.29	0.7338	AGO913
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Potri.001G215200 [exp]	10.95	0.7020
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.008G013300 [exp]	10.95	0.6793
AT1G55360			Protein of Unknown Function (D...		Potri.001G003800 [exp]	11.18	0.6988
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Potri.014G083800 [exp]	12.12	0.6784
AT5G57970			DNA glycosylase superfamily pr...		Potri.003G182300 [exp]	20.44	0.6517
AT4G32785			unknown protein		Potri.018G042000 [exp]	24.81	0.6738

Compare expression of checked genes

Potri.006G020800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.