Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	POP2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22200 834 / 0 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT1G80600 163 / 1e-44 WIN1 HOPW1-1-interacting 1 (.1) AT3G08860 154 / 4e-41 PYD4 PYRIMIDINE 4 (.1) AT2G38400 149 / 2e-39 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT5G46180 144 / 1e-37 DELTA-OAT ornithine-delta-aminotransferase (.1) AT4G39660 141 / 2e-36 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT5G63570 93 / 5e-20 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT3G48730 87 / 4e-18 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G57590 74 / 1e-13 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G018500 [exp] 1016 / 0 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.017G053500 [exp] 156 / 5e-42 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.006G106800 [exp] 149 / 1e-39 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.016G132200 [exp] 147 / 1e-38 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.011G082800 [exp] 145 / 3e-38 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.007G085600 [exp] 145 / 7e-38 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.005G095800 [exp] 142 / 6e-37 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.015G101100 [exp] 85 / 3e-17 AT3G48730 749 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Potri.006G170400 [exp] 76 / 3e-14 AT5G57590 1091 / 0.0 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010465 [exp] 771 / 0 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10003810 [exp] 771 / 0 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10025262 [exp] 164 / 1e-44 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10008025 [exp] 157 / 8e-42 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10038510 [exp] 155 / 3e-41 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10031196 [exp] 153 / 7e-41 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10023299 [exp] 153 / 9e-41 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10029922 [exp] 142 / 7e-37 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10004480 [exp] 139 / 9e-36 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10009086 [exp] 137 / 3e-35 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00202 [poplar] [flax] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Potri.006G020900.1 pacid=42767877 polypeptide=Potri.006G020900.1.p locus=Potri.006G020900 ID=Potri.006G020900.1.v4.1 annot-version=v4.1 ATGGTTATCAGCAAACTCCTGCGATCCACTCTTAAATCCCAGCTCCGTTCTTGCATAAAAAATGGCACTGCTTCTGGAAGTTCACAGGAGCATCATCTTC GGGCCCCTTTCCTGGCCAGATTATACAGTACCAAGGCATCTTTGCAAAAGGAAGATTCAACTATTGATGGTAACAGTTTCAAGGGGCATGATATGCTGGC ACCTTTCACTGCTGGCTGGCAGAGTAGTGATTTGAATCCTCTAGTCATAGAGAAATCTGAGGGTAGCTATGTATATGACATCAATGGGAAGAAGTATCTC GATGCTCTTGCTGGTCTTTGGTGCACAGCCTTAGGGGGAAATGAACCACGGCTCGTGGCTGCTGCAACAGAACAGTTGAATAAGTTGCCATTTTACCACT CCTTCTGGAATCGTACTACAAAACCTTCTTTGGATCTTGCAAAAGAACTACTTGAAACTTTTACTGCAAGTAAAATGGCAAAAGCCTTCTTTACAAATAG TGGATCAGAAGCCAATGACACTCAGGTGAAGCTAGTATGGTATTATAACAATGCTCTTGGAAGACCAAATAAGAAGAAATTTATAGCTCGAGCAAAATCG TACCATGGTTCAACTTTGATAGCAGCCAGTCTTTCTGGCCTTCCAGCATTGCACCAAAAATTTGATCTGCCTGCTCCATTTGTTCTACACACTGACTGTC CTCATTACTGGCGCTATCATCTCCCAGGTGAAACAGAGGAGGAATTCTCAACCAGACTAGCTAACAATTTGGAGAATCTTATCCTGAAAGAGGGACCAGA GACGATTGCTGCATTTATTGCTGAGCCTGTCATGGGGGCAGGGGGCGTGATACCTCCCCCAGCAACTTATTTTGATAAGATTCAAGCTGTGGTGAAAAAA TATGAAATTCTGTTTATTGCGGATGAGGTAATTTGTGCCTTTGGAAGGCTTGGGACGATGTATGGGTGTGACAAATACAACATCAAACCAGACCTTGTAT CTGTAGCAAAGGCCCTTTCCTCTGCTTACATGCCAATTGGAGCTGTTATGGTCAGCCCTGAAGTTTCAGATGTGATTCACTCTCAAAGCAGCAAACTTGG CTCTTTCTCTCATGGATTCACTTACTCTGGCCACCCTGTTGCTTGTGCGGTTGCCATTGAAGCACTCAAGATATACAAGGAAAGAAACATTCTTGATCAG GTAAACAGAATTGCCCCAAAATTTCAAGATGGTGTAAAAGCCTTCGCTGACAGTCCTATCATAGGGGAGATACGAGGAACTGGCTTGATTCTTGGTACAG AGTTCGTGGACAACAAGTCACCGAATGATCCATTCCCTCCTGAGTGGGGAGTTGGCGCATATTTTGGAGCACAATGTGAGAAAGATGGGATGTTGGTACG CGTTGCAGGGGATAACATAATGATGTCTCCACCATTTATCATGTCTCCTGAAGAGGTTGATGTGTTAATTAGCAAATATGGGAAAGCTCTGAGAGCTACT GAAGAGAGGGTAAAGGAACTGAAATCTCAACACAAGAAGCAGTAA
AA sequence Show only first row Show all	>Potri.006G020900.1 pacid=42767877 polypeptide=Potri.006G020900.1.p locus=Potri.006G020900 ID=Potri.006G020900.1.v4.1 annot-version=v4.1 MVISKLLRSTLKSQLRSCIKNGTASGSSQEHHLRAPFLARLYSTKASLQKEDSTIDGNSFKGHDMLAPFTAGWQSSDLNPLVIEKSEGSYVYDINGKKYL DALAGLWCTALGGNEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLETFTASKMAKAFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARAKS YHGSTLIAASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGETEEEFSTRLANNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQAVVKK YEILFIADEVICAFGRLGTMYGCDKYNIKPDLVSVAKALSSAYMPIGAVMVSPEVSDVIHSQSSKLGSFSHGFTYSGHPVACAVAIEALKIYKERNILDQ VNRIAPKFQDGVKAFADSPIIGEIRGTGLILGTEFVDNKSPNDPFPPEWGVGAYFGAQCEKDGMLVRVAGDNIMMSPPFIMSPEEVDVLISKYGKALRAT EERVKELKSQHKKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.006G020900 [exp]	0	1	POP2.2
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Potri.003G083600 [exp]	1.00	0.8003
AT1G11440			unknown protein		Potri.011G032700 [exp]	2.00	0.7836
AT2G01680			Ankyrin repeat family protein ...		Potri.008G134500 [exp]	3.46	0.7640
AT1G11700			Protein of unknown function, D...		Potri.004G015700 [exp]	7.74	0.7390
AT3G12620			Protein phosphatase 2C family ...		Potri.016G082800 [exp]	11.61	0.6940
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.006G060200 [exp]	12.72	0.7107
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Potri.003G146300 [exp]	13.22	0.6833
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Potri.009G074100 [exp]	14.42	0.7532	ZIP6.2
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024900 [exp]	16.97	0.7182
AT2G38550			Transmembrane proteins 14C (.1...		Potri.006G108700 [exp]	20.39	0.7165

Compare expression of checked genes

Potri.006G020900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.