Plant FIBer expression Database

Potri.006G021100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G22210 55 / 6e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G018650
[exp]
58 / 4e-13 AT3G22210 / unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003811
[exp]
50 / 5e-10 AT3G22210 73 / 4e-19 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G021100.1 pacid=42770510 polypeptide=Potri.006G021100.1.p locus=Potri.006G021100 ID=Potri.006G021100.1.v4.1 annot-version=v4.1
ATGGATGCAGGGATGCAAGTAGCGCTTCCCATACTAGGAGTTGTAGCTGCTGCTGCTGCTACTTTCTATGTTGTAAGCTTTTCTGAGCTTCGAGAGAAAT
CATTTAGAGACCTGGAAGAGTCTGAGGATGGAGGGTTTGAGTCATCTCTAAGCTCAAGAAAAAGGAGAGCAAGAAGAAAGGCTGAGAAAGAAGCCAAGAA
GTGA
AA sequence
>Potri.006G021100.1 pacid=42770510 polypeptide=Potri.006G021100.1.p locus=Potri.006G021100 ID=Potri.006G021100.1.v4.1 annot-version=v4.1
MDAGMQVALPILGVVAAAAATFYVVSFSELREKSFRDLEESEDGGFESSLSSRKRRARRKAEKEAKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G22210 unknown protein Potri.006G021100
[exp]
0 1
AT2G34620 Mitochondrial transcription te... Potri.011G081400
[exp]
2.23 0.9522
AT3G17668 ENA ENHANCER OF ATNSI ACTIVITY, Dn... Potri.014G179800
[exp]
2.82 0.9468
AT3G23760 unknown protein Potri.018G096056
[exp]
2.82 0.9513
AT1G17850 Rhodanese/Cell cycle control p... Potri.015G029600
[exp]
7.07 0.9468
AT4G31115 Protein of unknown function (D... Potri.005G179800
[exp]
10.77 0.9173
AT3G12930 Lojap-related protein (.1) Potri.001G458600
[exp]
10.95 0.9277
AT1G03310 ATISA2, ISA2, D... BRANCHING ENZYME 2, ARABIDOPSI... Potri.002G219900
[exp]
10.95 0.9340
AT5G58770 Undecaprenyl pyrophosphate syn... Potri.001G250900
[exp]
11.22 0.9067
AT3G26630 Tetratricopeptide repeat (TPR)... Potri.002G220600
[exp]
18.65 0.9467
AT1G07700 Thioredoxin superfamily protei... Potri.014G029200
[exp]
22.27 0.9364

Potri.006G021100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.