Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32240 838 / 0 unknown protein AT1G05320 236 / 7e-65 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G018700 [exp] 1767 / 0 AT2G32240 830 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010464 [exp] 1139 / 0 AT2G32240 840 / 0.0 unknown protein Lus10003812 [exp] 1133 / 0 AT2G32240 834 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G021200.1 pacid=42769551 polypeptide=Potri.006G021200.1.p locus=Potri.006G021200 ID=Potri.006G021200.1.v4.1 annot-version=v4.1 ATGGAAGGAGAGACACAAGTCAGTTCAGAAGTTCCAGTTGTGAAGGGTGATCCTGATGTTGCTGATCTTATTAAGCTTACAAATGGAGACTTGACGCATG TAGAAAAGGAAGGGAGGAAGGAAGAGGATGAAACTGATGGAGAATTCATCAAAGTGGAGAAGGAATCACTTGATGTGAAGGATGGTGGTTCTCATACCGC TGAGGTGAAATCTGCTGGGGAGGCTGATAAGCCATCTGTCGTGGAAAGAAGTTTAAGCGGTTCGACCAGAGAATTGCTAGAGGCCCAAGAGAAGCTGAAG GAACTTGAGCTCGAATTGGAAAGAGTATCCGCAGCATTAAAGCATTCTGAATCCGAGAATACACTGCTGAAGGATGATGTCTTGCTGGCCAATGAGAAGT TGGATGAAAGTGGAAAGAAGTATGGAGAGCTTGAAATCAGTCACAAGAAATTGCAAGAGCAGATAATTGAAGCTGAGGAGAAATTTAGTGCACAGCTCCA CACTTTGCAAGAAGCTTTACAAGCAAAAGAAACCAAGCATAAGGAATTGGTTGAGGTTAAGGAATCATTTGATGGTATCACCCTTGAACTCGAGAATTCA AGAAAGAAGATGCAAGAGTTGGAGCATGAGCTGGAAGTATCTTCTGGTGAGGCAAAGAAGTTTGAGGAGCTGCACAAAGAAAGTGGTTTGCATGCTGAAT CCGAGACGCAGAGGGCCTTGGAGTTTGAAAGGCTGCTTGAGGCGGCAAAACTGAGTGCAAAAGAAATGGAAAATCAGATGGCTACTCTTCAGGAGGAAGT CAAGGGCCTGTACGAGAAGGTTGCAGGGAATCTGAAAGTTGAAGGGGCACTTAAGAGCACGACAGCAGAACTTTCAGCAGCTAATGAAGAGTTGGCTGCT TCAAAATCACAGCAGCTGGACATAGAGCAAAGACTTTCTTCAAAAGAGGCTCTCATCGGCGAACTGACCCAGGAATTGGACCTCAAGAAAGCTTCAGAAT CTCAGGTGAAGGAAGATTTCTTGGCTCTTGAGAATTTGCTCACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCGGAGATGGAAGGCATGAAGCTGAG GTTGCAGGAAGAAATCAACACAAGGGAATCAGTTGAGGCTGGGCTTAAAACCCATGAAGCACAGGTCGCAACTGTACAGGAAGAATTGGCTAAAGTACTG AAAGAAAAAGAAGCTCTAGAAGCAGCCATGGCGGATCTCACAAGTAATGCAGCACAGATGAAAGAGTTGTGCGGTGAGCTTGAGGAAAAGTTGAAAACTT CAGATGAGAATTTCTGTAAAGCAGATTCTCTTTTGTCCCAAGCTTTGTCAAACAGTGCAGAGCTAGAACAGAAGTTGAAGTTTCTGGAAGATCTCCACAG TGAATCTGGAGCTGCTGCAGCAACTGCCTCTCAAAAGAACCTGGAGCTTGAGGATTTAATCCGAGCTTCAAATGAAGCAGCAGAAGAGGCAAAATCACAA CTGAGAGAGCTTGAGATACGGTTCGTTGCAGCAGAGAAGAAGAATGTGGAACTTGAGCAACAGTTAAATTTGGTCGAACTAAAAAGCAGTGATGCTGAGA GACAGGTGAGAGAATTCTCAGAGAAAATATCTGAACTCAGTACTACACTGAAAGAGGTAGAGGGGGAAAAGAATCAGTTGAGTGCCCAGATGGAGGAATA CCAGGAAAAGATAAGCCACCTTGAATCTTCCCTGAATCAATCATCATCTCGGAATTCAGAACTTGAGGAGGAGTTGAAAATTGCAAAAGAAAAATGTGCT GGGCATGAGGACCGAGCAAAAATGCACTATCAGCGCAGCCTTGAACTTGAAGATTTGTTCCAGACATCTCATTCCAGATTAGAGGATGCTGGAAAAAAGG CAAGTGAGTTTGTGCTGTTGCTTGAAGCAGAAAAGTACCGAATCAAGGAACTTGAAGAGCAGAACAGTGCATTTGAAAAGAAATGTGTGGATGCAGAAGC AGATTCCCGTAAATACTTAGATAAGATATCTGAACTAGCATCTGAAATTGAGGCTTACCAAGCAAAGTCATCAAGCCTTGAAGTTTCGCTGCAGATGGCT GGGGAGAAGGAGACAGAGCTAACAGAATTACTGAATTTGGTCACTGATGAAAAGAAAAGGCTGGAAGAGGCATCAAGCAGTTCCAATGAGAAGCTGAGTG AAGCTGAGAATCTTGTGGGAGTGTTGCGTAATGAATTGATCGTGATGCAAGAGAAGTTGGAAAGCATTGAAAATGATCTAAAGGCTGCTGGATTGAAAGA AAGTGATATAATGGTGAAGCTCAAATCTGCAGAGGAGCAACTTGAGCAACAAGAGAAATTATTAGAGGAAGCCACTTCTAGAAAGTCAGAGCTTGAGTCA TTACACGAAGCCCTAACAAGGGATTCAGAAATCAAACTTCAAGAAGCATTAACAAATTTCACTAACAGGGATTCTGAAGCAAAATCCCTGTTTGAGAAAC TGAATACCCTTGAAGACCAAGTAAAGGAATACAAGGAGCAGATAACTGAAGTAACTGGAAGGTCTGCACTTTTGAAGGAAGAATTGGACTTGTGCTTGTT AAAAATGGTAGCTTTGGAAACCTCCAATGAAGAACTCAAAAGTCAGATAGTGGAAGCAGAAACCAAGTTTTCCAACTCCTTCTCAGAGAATGAACTCTTA GTTGAGACGAACAATCAACTGAAAAGCAAGATTGATGAACTTCAGGAATTGCTAAATTCTGCCGTTTCTGAGAAGGAAGCCACATCTCAACAACTTGCTT CTCACGCAAGCACTATCACAGAACTAACAGACAAGCACTCAAGAGCCATAGAACTTCATTCTGCAACTGAGTCGCGAATGATGCACGCTGAAACACAATT ACAAGAGGCCATTCAGAGCCTCACTCTGAAGGATGTAGAAACGAGAGATTTGAATGAGAAGCTAAAAGCACTTGAGGGGCAAGTAAAACTGTATGAAGAA CAGGCTCATGAAGCATCCACAATTTCTGAATCTCGAAAAGGCGAGCTGGAAGAGACTCTCCTGAAAGTAACACATCTGGAAACTGTTTTAGAGGAACTTA AAACAAAGTCAGGTCACTTTGAAAAAGAGAGTGGTGTGCTAGCTGAGGATAATTTGAAGCTCACTCAGGAGCTAGCCTCATATGAGTCCAAACTCAGAGA TTTAGAAGCAAAACTATCTACAATCCTTTCTGAGAAGGATGGAACTATTGAGCAGCTTCACATTTCAAAGAAGGCCTTTGAGGATTTGCGGCAGCAGCTT ACTGATGAAGGGCAGAAATTACAGTCTCAGATATCTTCAGTTTTGGAAGAGAGCAACCTGCTCAATGAAACATATCAACATGAAAAGAAGGAACTTCAGT CAGTGATCATTCAGCTCGAGGAAGAACTGAAGGGACAGAAGGCCAATGAAGATGCCATGAAATCTGAGATTGAAAGTCTCAAGGCTGAGGTTGCTGAGAA GTCAGCATTGCAAACTTCTCTCGAGGAACTTGAAAAACAATTGACGACTGCTGCAGTTGAACTAAAAGAACAGAAAGAAGCAAATTCTCAAAAGCTGGAA AAAGAAGCAGCTCTGAAGAAATCCTTTGCAGACCTTGAAGCCAAGAACAAAGAAGTGTCACATCTAGAGAACCAAGTGAAGGAACTTGAGCAGAAACTGC AAGAGGCTGATGCTAAATTATTGGAAAAGCAGGGTGATGGAAGCAGTCCAGCTGAACAGAAAGGAGTAGAGATCAAATCCAGAGATATCAGCGCCGCCAT TTCTACTCCCACAAAAAGAAAGAGCAAGAAAAAGTTAGAAGCTGCATCTGCGCAAGCCTCATCCTCTTCTGAAACACATACTCAAACTGCCGATGTTTCG CCTGCCATGAACTTTAAATTCATCTTGGGAGTGGCCTTGGTATCTATCATCATTGGTGTAATTCTTGGGAAGCGTTATTAG
AA sequence Show only first row Show all	>Potri.006G021200.1 pacid=42769551 polypeptide=Potri.006G021200.1.p locus=Potri.006G021200 ID=Potri.006G021200.1.v4.1 annot-version=v4.1 MEGETQVSSEVPVVKGDPDVADLIKLTNGDLTHVEKEGRKEEDETDGEFIKVEKESLDVKDGGSHTAEVKSAGEADKPSVVERSLSGSTRELLEAQEKLK ELELELERVSAALKHSESENTLLKDDVLLANEKLDESGKKYGELEISHKKLQEQIIEAEEKFSAQLHTLQEALQAKETKHKELVEVKESFDGITLELENS RKKMQELEHELEVSSGEAKKFEELHKESGLHAESETQRALEFERLLEAAKLSAKEMENQMATLQEEVKGLYEKVAGNLKVEGALKSTTAELSAANEELAA SKSQQLDIEQRLSSKEALIGELTQELDLKKASESQVKEDFLALENLLTATKEDLQAKVSEMEGMKLRLQEEINTRESVEAGLKTHEAQVATVQEELAKVL KEKEALEAAMADLTSNAAQMKELCGELEEKLKTSDENFCKADSLLSQALSNSAELEQKLKFLEDLHSESGAAAATASQKNLELEDLIRASNEAAEEAKSQ LRELEIRFVAAEKKNVELEQQLNLVELKSSDAERQVREFSEKISELSTTLKEVEGEKNQLSAQMEEYQEKISHLESSLNQSSSRNSELEEELKIAKEKCA GHEDRAKMHYQRSLELEDLFQTSHSRLEDAGKKASEFVLLLEAEKYRIKELEEQNSAFEKKCVDAEADSRKYLDKISELASEIEAYQAKSSSLEVSLQMA GEKETELTELLNLVTDEKKRLEEASSSSNEKLSEAENLVGVLRNELIVMQEKLESIENDLKAAGLKESDIMVKLKSAEEQLEQQEKLLEEATSRKSELES LHEALTRDSEIKLQEALTNFTNRDSEAKSLFEKLNTLEDQVKEYKEQITEVTGRSALLKEELDLCLLKMVALETSNEELKSQIVEAETKFSNSFSENELL VETNNQLKSKIDELQELLNSAVSEKEATSQQLASHASTITELTDKHSRAIELHSATESRMMHAETQLQEAIQSLTLKDVETRDLNEKLKALEGQVKLYEE QAHEASTISESRKGELEETLLKVTHLETVLEELKTKSGHFEKESGVLAEDNLKLTQELASYESKLRDLEAKLSTILSEKDGTIEQLHISKKAFEDLRQQL TDEGQKLQSQISSVLEESNLLNETYQHEKKELQSVIIQLEEELKGQKANEDAMKSEIESLKAEVAEKSALQTSLEELEKQLTTAAVELKEQKEANSQKLE KEAALKKSFADLEAKNKEVSHLENQVKELEQKLQEADAKLLEKQGDGSSPAEQKGVEIKSRDISAAISTPTKRKSKKKLEAASAQASSSSETHTQTADVS PAMNFKFILGVALVSIIIGVILGKRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32240			unknown protein		Potri.006G021200 [exp]	0	1
AT2G32240			unknown protein		Potri.016G018700 [exp]	1.41	0.7953
AT5G12300			Calcium-dependent lipid-bindin...		Potri.009G070400 [exp]	2.00	0.8425
AT2G33360			Protein of unknown function (D...		Potri.010G066200 [exp]	5.19	0.7894
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.003G097100 [exp]	7.41	0.7370
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Potri.014G164800 [exp]	15.16	0.6289
AT1G77460			Armadillo/beta-catenin-like re...		Potri.005G180100 [exp]	17.14	0.7040
AT5G51670			Protein of unknown function (D...		Potri.015G131800 [exp]	17.17	0.7569
AT4G33565			RING/U-box superfamily protein...		Potri.007G111900 [exp]	21.35	0.7557
AT1G27620			HXXXD-type acyl-transferase fa...		Potri.005G230900 [exp]	21.54	0.7709
AT2G32800		AP4.3A	protein kinase family protein ...		Potri.017G055000 [exp]	25.09	0.7396

Compare expression of checked genes

Potri.006G021200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.