Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22270 699 / 0 Topoisomerase II-associated protein PAT1 (.1) AT4G14990 661 / 0 Topoisomerase II-associated protein PAT1 (.1) AT1G79090 508 / 2e-169 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G020100 [exp] 1236 / 0 AT3G22270 733 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.016G020600 [exp] 941 / 0 AT3G22270 540 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.011G143900 [exp] 678 / 0 AT1G79090 734 / 0.0 unknown protein Potri.001G457800 [exp] 657 / 0 AT1G79090 687 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039002 [exp] 816 / 0 AT3G22270 734 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10027297 [exp] 795 / 0 AT3G22270 694 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10010445 [exp] 770 / 0 AT4G14990 721 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10012099 [exp] 756 / 0 AT3G22270 702 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10031788 [exp] 603 / 0 AT1G79090 763 / 0.0 unknown protein Lus10031210 [exp] 583 / 0 AT1G79090 766 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G021900.1 pacid=42769999 polypeptide=Potri.006G021900.1.p locus=Potri.006G021900 ID=Potri.006G021900.1.v4.1 annot-version=v4.1 ATGGAGCGATCTGATGGCAAAGATTTCAAAGAATTCACTGATTCTTCTTCGGGTGCACTCTTTGATGCTTCACGGTACGAATTTTTTGGTCAACATGCTG TGGAAGAAGTGGAGTTGGGTGGTTTAGAAGATGAAGGTGACAATCTTGTGCTTGGACCTGCTGATGATGAGTATCGTTTGTTTGATAGAGATGAAGGTGT AAGTTTAGGATCTTTATCTGAAATTGATGATCTGGCAAGTACTTTTGCAAAGTTGAACAGAGTTGTAACCGGACCAAGAAATCCAGGAGTTATTGGTGAC AGAGGATCTGGATCGTTTTCAAGGGAAAGTTCATCTGCTACTGATTGGGCACAAGATGGAGAGTTTGCTGGCTGGTTAGATCAACAAATGTTTTGTGCAG AAAATGATCAGGACAGCAAGAGATGGTCATCACAACCCCAACCTTCTTCTGCTCGTTTCTCAGAATCAAAGCCATTGTACAGAACTTCCTCGTATCCCCT GCAGCCACTGCAGCAGCCTCACTTCTCAAGTGAACCAATTCCTGTACCCAAATCAAATTTCACATCTTTCCCCCCACCTGGTGCTTCTCCACACCACCTC AATGTTGCTTCTCTTTCTGGTGGACTGCAGTCGCACTTGTCTGCTCCAAACCTCTCTCCTTTGTCCAACTCTAATCTTCATCTGGCTGGTTTACAGCACG GGTTACATTATGGTGGAAATCTGCCCCAGATCATGTCTCCTGGCCTTTCTTTTAATAATAGGCCACAAAAGCATTGGCCTAATCATGCTGGTCTATTACA TGTAGATCAGTCTAGGCTCTTAGAGAGTATATTGCAACAACAACTATCGCATCAAAATGGCCTAATGTCTGCCCATTTGATGTCACCACAGCAGCAATTG CAACAGCAGAGACTGCACTCTTCACTTCAACCATCACTGGCTCATTTTGCCGCAATGCAATCTCAACTCTTTAATTCCCATCCTTCATCATTGCATATCA GGGATCAAAAACATAAATCATCCTCTCAAAGAAACCGGCGCTTTTCGCAAGGGTCTGACACTGGTAGTCAGAAAAGTGATAGTGGCTGGGTGCAATTCCG ATCCAAGCATATGACAGCTGATGAAATAGAGAGTATACTGAAAATGCAGCATGCTGCCACTCATAGCACTGACCCATATATAGATGATTACTACCACCAA GCTTCTATTGCCAAGAAATCTACTGGGTCAAGAATTAAACACAATTTCTGCCCATCTCACATGAAGGAGCTCCCTTCTCGATCTCGTAACAGTGCAGACC AGCATTCTCATCTCCATTTTGATGCTCTTGGGAAGATTCCTCTCCCACCCATACGTAAACCTCGCCCCCTTCTTGAAGTTGATTCTCCTAGTTCTGGTGA TGGAAACTCTGAACAAATCTCTGAGAGGCCTTTGGAACAGGAACCTATGCTTGCAGCTAGAATCACTATTGAAGATAGCTTATCTCTTCTTCTTGATGTA GATGATATTGATCGTTTCCTGCAGTGTAATCAGTCCCAGGATGGTGGGGCTCAGCTCAGGCGTAGGCGGCAGAACTTGCTTGAAGGCTTGGCAGCATCAC TCCAGCTTGTTGACCCACTTGGCCAAACTGGCCAATCTGTTGGACTGGCCTCGAAGGATGACATTGTGTTCCTGCGGTTAGTATCTCTTCCCAAGGGTCA AAAGCTTATCTGCAAGTTTCTCCAGCTTCTATTCCCTGGCAATGAACTCACCCGTGTTGTCTGCATGGCTATTTTCCGTCACTTGAGATTTTTGTTTGGT GGCATTCCCTCGGATACGGATGCAGCTGACACAACTACAAATCTCACAAAGACAGTTTCTGCATGTGTAAATGGCATGGATCTTCATGCATTGAGTGCTT GCCTGGTTGCAGTAGTTTGTTCTTCAGAGCAGCCACCTTTTCGGCCTCTTGGTAGTCCTGCTGGGGATGGGGCCACAGTTATTTTGAAATGTCTTCTTGA AAGAGCTAGTAAACTATTACATGGTCCTCAGGCTTCTGCCAACTGTGCTATGCCCAATTTTGCTCTTTGGCAGGCATCATTTGATGAATTTTTTGATCTT CTTACGAAGTACTGCCTGATTAAATATGACACCATACTGCATTCAGTCTATGCGAAGACACCACCTAGTACAGAAGGTATTGATTTGGAGGTGCGTGCAG CTACAAAACAAGAAATGCCCGTTGAGCTTTTACGAGCTTGCCTTCCTCATACGAATGAACGCCAGATGGAGCTCTTAAGACATTTTGGGCAGCAACGCAA TGCCAGCACTGGGCTGAGTGCACATCCAGGGAATAGTGGTCACATAAACTCTGAATCGGTGAGGAGTTGA
AA sequence Show only first row Show all	>Potri.006G021900.1 pacid=42769999 polypeptide=Potri.006G021900.1.p locus=Potri.006G021900 ID=Potri.006G021900.1.v4.1 annot-version=v4.1 MERSDGKDFKEFTDSSSGALFDASRYEFFGQHAVEEVELGGLEDEGDNLVLGPADDEYRLFDRDEGVSLGSLSEIDDLASTFAKLNRVVTGPRNPGVIGD RGSGSFSRESSSATDWAQDGEFAGWLDQQMFCAENDQDSKRWSSQPQPSSARFSESKPLYRTSSYPLQPLQQPHFSSEPIPVPKSNFTSFPPPGASPHHL NVASLSGGLQSHLSAPNLSPLSNSNLHLAGLQHGLHYGGNLPQIMSPGLSFNNRPQKHWPNHAGLLHVDQSRLLESILQQQLSHQNGLMSAHLMSPQQQL QQQRLHSSLQPSLAHFAAMQSQLFNSHPSSLHIRDQKHKSSSQRNRRFSQGSDTGSQKSDSGWVQFRSKHMTADEIESILKMQHAATHSTDPYIDDYYHQ ASIAKKSTGSRIKHNFCPSHMKELPSRSRNSADQHSHLHFDALGKIPLPPIRKPRPLLEVDSPSSGDGNSEQISERPLEQEPMLAARITIEDSLSLLLDV DDIDRFLQCNQSQDGGAQLRRRRQNLLEGLAASLQLVDPLGQTGQSVGLASKDDIVFLRLVSLPKGQKLICKFLQLLFPGNELTRVVCMAIFRHLRFLFG GIPSDTDAADTTTNLTKTVSACVNGMDLHALSACLVAVVCSSEQPPFRPLGSPAGDGATVILKCLLERASKLLHGPQASANCAMPNFALWQASFDEFFDL LTKYCLIKYDTILHSVYAKTPPSTEGIDLEVRAATKQEMPVELLRACLPHTNERQMELLRHFGQQRNASTGLSAHPGNSGHINSESVRS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22270			Topoisomerase II-associated pr...		Potri.006G021900 [exp]	0	1
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.008G149900 [exp]	1.73	0.9241
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Potri.018G076200 [exp]	3.31	0.8742
AT1G69060			Chaperone DnaJ-domain superfam...		Potri.010G139100 [exp]	4.24	0.8851
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.014G078500 [exp]	4.47	0.8874
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.004G196300 [exp]	7.93	0.8825
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.002G080600 [exp]	8.66	0.8872
AT1G32610			hydroxyproline-rich glycoprote...		Potri.003G091800 [exp]	13.26	0.8639
AT5G01960			RING/U-box superfamily protein...		Potri.006G111800 [exp]	13.85	0.8726
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.001G036800 [exp]	16.73	0.8723	SUVH3.4,SDG950
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	17.43	0.8811

Compare expression of checked genes

Potri.006G021900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.