Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30620 675 / 0 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G20460 672 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G44480 619 / 0 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34850 410 / 8e-145 MEE25 maternal effect embryo arrest 25, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64440 262 / 5e-85 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G10960 261 / 2e-84 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT4G23920 250 / 2e-80 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G12780 233 / 1e-73 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G63180 226 / 5e-71 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT1G78570 103 / 9e-24 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G020000 [exp] 748 / 0 AT1G30620 670 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.011G156100 [exp] 681 / 0 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G459700 [exp] 677 / 0 AT1G30620 730 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G090700 [exp] 260 / 4e-84 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G140900 [exp] 245 / 2e-78 AT4G10960 606 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G123700 [exp] 240 / 3e-76 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Potri.001G383500 [exp] 105 / 2e-24 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.011G103700 [exp] 103 / 9e-24 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G272700 [exp] 100 / 9e-23 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038423 [exp] 660 / 0 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10003496 [exp] 605 / 0 AT1G30620 656 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10013107 [exp] 598 / 0 AT1G30620 652 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10023074 [exp] 256 / 7e-82 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10003875 [exp] 253 / 3e-81 AT4G10960 616 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10001822 [exp] 249 / 1e-79 AT4G10960 615 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10002246 [exp] 221 / 5e-69 AT1G12780 592 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10029572 [exp] 220 / 5e-67 AT1G12780 585 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10032394 [exp] 211 / 8e-66 AT4G10960 494 / 8e-178 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10038146 [exp] 107 / 5e-25 AT1G78570 1228 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.006G022000.2 pacid=42767499 polypeptide=Potri.006G022000.2.p locus=Potri.006G022000 ID=Potri.006G022000.2.v4.1 annot-version=v4.1 ATGGATTTCCTGGATTCAAGAAGAAAGAGCAATTCTGCTGGAAAAGTTATTGCAGTTGCATTCTTCATTGCAGTATGCATTGTCATGCTCAAGCAAGTGT ACTCACCTAGTTATACCAGCCCCGACATGTTCTCCCAACATGAGCTAGGCGTAACGCATGTGTTGGTGACCGGAGGTGCTGGTTACATAGGTTCTCACGC TGCACTTCGACTCTTGAAGGATTCATACCGAGTAACTATAGTGGACAATCTCTCTCGAGGGAATCTCGGTGCGGTTAAAGTTCTTCAAGAGCTATTTCCA GAGCCTGGGAGATTGCAGTTCATATATGCTGACCTAGGAGATGCAAAAGCTGTAAACAAAATCTTTGCCGAAAATGCATTTGATGCTGTGATGCATTTTG CTGCTGTTGCATATGTTGGTGAAAGTACAATAGAGCCCCTTAGATATTATCACAATATCACATCAAATACCTTGGTTGTCTTGGAAGCAATGGCTGCACA TAATGTGAAGACATTAATCTATTCGAGCACTTGTGCAACGTACGGAGAACCTATTAAGATGCCGATTAGAGAAGAAACTCCTCAGCTTCCAATCAACCCC TATGGAAAAGCCAAGAAAATGGCAGAAGATATCATAATTGACTTCTCCAACACCACTGACATGGCTGTCATGATCCTAAGATACTTCAATGTTATTGGGT CTGACCCGGAAGGAAGATTAGGGGAAGCTCCACGACCTGAGCTTCGTGAGCATGGCCGAATCTCTGGTGCTTGTTTTGATGCAGCTCGAGGGATAACACC TGGACTCAAGGTTAAAGGGACAGACTATAAAACAGCTGATGGCACATGTGTACGCGACTATATCGATGTCACTGACCTGGTTGATGCCCATGTGAAAGCT CTTGCCCACGCAAAACCTCGGAAAGTTGGCATTTACAATGTTGGAACTGGAAAAGGCAGATCAGTGAAGGAGTTTGTTGATGCGTGTAAGAAGGCAACAG GCGTGGACATAAAGGTTGAATACCTTGATCGCCGGCCAGGAGACTATGCTGAGGTCTTCAGTGATCCTTCCAAAATAAAACAAGAGCTAAGCTGGACAGC TCAATATACTGACCTTCAGAAGAGTTTACAGATTGCTTGGAAATGGCAGAAGTCACATTTGAATGGTTATTGA
AA sequence Show only first row Show all	>Potri.006G022000.2 pacid=42767499 polypeptide=Potri.006G022000.2.p locus=Potri.006G022000 ID=Potri.006G022000.2.v4.1 annot-version=v4.1 MDFLDSRRKSNSAGKVIAVAFFIAVCIVMLKQVYSPSYTSPDMFSQHELGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNLGAVKVLQELFP EPGRLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTIEPLRYYHNITSNTLVVLEAMAAHNVKTLIYSSTCATYGEPIKMPIREETPQLPINP YGKAKKMAEDIIIDFSNTTDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGITPGLKVKGTDYKTADGTCVRDYIDVTDLVDAHVKA LAHAKPRKVGIYNVGTGKGRSVKEFVDACKKATGVDIKVEYLDRRPGDYAEVFSDPSKIKQELSWTAQYTDLQKSLQIAWKWQKSHLNGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.006G022000 [exp]	0	1
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.015G019800 [exp]	1.73	0.9641
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.003G169100 [exp]	2.00	0.9627
AT1G77810			Galactosyltransferase family p...		Potri.002G089800 [exp]	3.46	0.9532
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048700 [exp]	4.00	0.9306
AT5G38210			Protein kinase family protein ...		Potri.017G118250 [exp]	4.58	0.9467
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.005G180200 [exp]	4.69	0.9354	Pt-ATAF1.1
					Potri.005G223450 [exp]	4.89	0.9508
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.005G223600 [exp]	6.32	0.9420	PT1.5,PtrPHT1-7
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Potri.012G069700 [exp]	9.38	0.9238	PtrAOH3,ATH2.3
AT1G66920			Protein kinase superfamily pro...		Potri.017G116955 [exp]	11.22	0.9336

Compare expression of checked genes

Potri.006G022000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.