Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16660 1229 / 0 heat shock protein 70 (Hsp 70) family protein (.1) AT1G11660 273 / 3e-79 heat shock protein 70 (Hsp 70) family protein (.1) AT1G79930 265 / 5e-76 AtHsp70-14, HSP91 heat shock protein 91 (.1.2) AT1G79920 265 / 8e-76 AtHsp70-15 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G12580 207 / 1e-56 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G09080 207 / 2e-56 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 205 / 7e-56 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 203 / 4e-55 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 201 / 2e-54 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT1G16030 199 / 4e-54 HSP70B heat shock protein 70B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G019800 [exp] 1548 / 0 AT4G16660 1178 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.004G016700 [exp] 270 / 3e-78 AT1G11660 1025 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G055800 [exp] 253 / 1e-71 AT1G79920 1283 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.011G139100 [exp] 250 / 4e-71 AT1G11660 990 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G180100 [exp] 251 / 6e-71 AT1G79920 1262 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 218 / 3e-60 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 211 / 6e-58 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042600 [exp] 211 / 6e-58 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.013G018000 [exp] 210 / 8e-58 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027310 [exp] 1254 / 0 AT4G16660 1275 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10039014 [exp] 1247 / 0 AT4G16660 1288 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10037529 [exp] 277 / 6e-80 AT1G79930 1313 / 0.0 heat shock protein 91 (.1.2) Lus10011461 [exp] 275 / 3e-79 AT1G79930 1282 / 0.0 heat shock protein 91 (.1.2) Lus10037531 [exp] 273 / 1e-78 AT1G79920 1269 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10019627 [exp] 253 / 2e-72 AT1G11660 916 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017306 [exp] 214 / 1e-58 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10040078 [exp] 211 / 2e-57 AT1G11660 919 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10005953 [exp] 207 / 8e-57 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10002319 [exp] 207 / 1e-56 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00012 [poplar] [flax] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Potri.006G022100.4 pacid=42768537 polypeptide=Potri.006G022100.4.p locus=Potri.006G022100 ID=Potri.006G022100.4.v4.1 annot-version=v4.1 ATGAGGTTATTAAGATTATGGTTATTACTCTTAATTATGATCGTGTTGAATTCAATTCCGTCGGAATCAGCTGTTTCGAGTATAGATCTTGGTTCAGATT GGCTAAAAGTAGCAGTAGTAAACCTTAAGCCAGGGCAAACCCCGATTTCGATAGCGATTAACGAAATGTCTAAGAGAAAAACCCCGGCTTTAGTTGCATT CCAATCTGGAACTAGGCTTTTAGGTGAAGAAGCTGCGGGGATTACTGCACGGTATCCGGATAAAGTGTATTCGCATTTGCGTGATATGTTAGGGAAAACT TATGATCAAGTTAAGGAGTTTTTGGATGCAATGTATTTGCCGTTTGATGTTGTGGAGGATTCTAGAGGGGCAGTTGCGTTTCGGATTGAGGATGAGAGTG GGAATGTGGGTTTGTATTCAGTTGAGGAGTTGTTGGGTATGATTTTAGGGTTTGCTGGGGATTTGGCAGAGTTTCATTCGAAGGTTGTGGTTAAGGATAC GGTTGTTAGTGTGCCTGCATATTTTGGGCAGGCAGAGAGGAGAGCATTGGTTCAGGCAGCACAGTTGGCTGGGATTAATGTGCTTGCTTTGATTAATGAG CATTCTGGTGCTGCTTTGCAGTATGGTATTGATAAGGATTTTTCTAATGGATCGCGGTACGTTGTGTTTTATGATATGGGTGCGAGTAGTACTTATGCTG CGCTTGTGTATTTCTCGGCTTATAATGCTAAGGAGTTTGGGAAGACTGTGTCTGTCAATCAGTTTCAGGTTAAGGATGTCAGATGGGACCCAGAACTTGG AGGTCGGAGTATGGAATCAAGGTTGGTGGAGTTCTTTGCTGATGAGTTTAATAAACAAGTTGGGAGTGGCATTGATGTGAGGAAGTCTCCAAAGGCAATG GCTAAATTGAAGAAACAGGTGAAACGTACGAAAGAAATCTTGAGTGCAAACACTATGGCTCCTATATCAGTTGAATCCCTCTATGATGATCGGGACTTCA GGAGCTCCATAACACGTGAGAAGTTTGAAGAGCTCTGTGGAGACCTGTGGGACAGATCTCTTGTACCCATCAAGGAAGTTTTGAAGCATTCAGGTCTGAA GGTGGATGAGATATATGCAGTAGAGCTTATAGGAGGTGCTACCAGAGTGCCTAAGTTGCAGGCTAAGCTCCAGGAATTTCTTGGAAAGAATGAACTGGAC AAACATTTAGATGCTGATGAAGCTATAGTTCTTGGTTCGTCTCTGCATGCTGCAAATTTGAGTGATGGAATCAAATTGAATCGCAAGCTAGGAATGGTTG ATGGTTCATCATATGGATTGGTGGTTGAATTAGACGGGTCTGATCTGCAGAAAGATGAGAGCACCAGGCAGTTACTTGTGCCAAGGATGAAAAAACTCCC CAGTAAGATGTTCAGATCCATCATCCATAAGAAAGACTTTGAAGTTTCACTGGCATACGAGTCTGATCTTTTACCACCTAGTGTTACCTCTCCTATATTT GCGCAGTATGCTGTATCTGGCCTGACAGATGCAAGCGAGAAGTATTCATCTCGGAATTTGTCCTCCCCCATCAAGGCAAATCTGCATTTTTCTCTTAGTA AAAGTGGAATTCTTTCATTGGATCGTGCAGATGCTGTTATTGAAATATCAGAATGGGTGGAAGTTCCTAAAAAGAACCTGACTGTAGAAAATACAACAAC CACCTCTCCAAATATAACACTTGAATCTGACACTAAGAACACTACTGAAGAAAGTGATGTAAATTTGAATTCTGATGGTGTGACTGACAACTCATCCAAC AATAATGTTGAAGGACCAAGCACTACTGAGCCTGTTACAGAGAAGAAGCTAAAAAAACGGACTTTTAGGGTTCCCCTGAAGATTGTCGAGAAGACAGTGG GACCTGGAATGCCTCCGTCCAAAGAATATCTAGCTGAAGCTAAAAGAAAATTAGAAGAATTGAACAAAAAGGACGCCGAGCGAAGAAGAACTGCTGAGTT GAAAAATAACTTGGAAGGATATATATATTCTACTAAAGAAAAGCTTGAGACATCTGAGGAGTTTGAGAAAATTTCTACCGCTGATGAACGGAAATCCTTC ATTGAAAAGCTTGATGAGGTTCAAGAATGGCTATATACAGATGGTGAAGATGCCACTGCAAAAGAGTTTGAGGAACGCCTAGATTCACTAAAAGCTATTG GTGACCCAATATTTTTCAGGTATAAAGAACTGTCAGCAAGACCAAAATCTATAGAGTTAGCTCGAAAGTATCCTGGTGAGCTGCAACAGATTGTAAAGGG CTGGGAGACAAAGAAACCTTGGCTTCCAAAGGACAGAGTAGATGAGGTGGTAGGTGATGCCGACAAGTTAAAGAGTTGGCTGGATAAAAAGGAGGCAGAA CAGAAGAAGGCCTCTGGCTTCAGCACACCAGTATTCACATCTGAAGAAGTATATTTGAAGGTGTTTAGTCTGCAAGAAAAGGTTGCCAGTGTTAACAGAA TTCCCAAGCCAAAGCCTAAGAAGAATGAATCTGAAACCAGCAGCGATAAAACAAGCAGCGCTGATTCAACTTCTGGCGAGACTCCTGAAAAGGAGAAACA AACAACAGATTCAAATGGTTCCGCTGATGAAAAAATCAACCCAGATGGATCAACTGTTGAAGACGTCAACCCAGAACCCGAAGCTCGTGATGAGTTATGA
AA sequence Show only first row Show all	>Potri.006G022100.4 pacid=42768537 polypeptide=Potri.006G022100.4.p locus=Potri.006G022100 ID=Potri.006G022100.4.v4.1 annot-version=v4.1 MRLLRLWLLLLIMIVLNSIPSESAVSSIDLGSDWLKVAVVNLKPGQTPISIAINEMSKRKTPALVAFQSGTRLLGEEAAGITARYPDKVYSHLRDMLGKT YDQVKEFLDAMYLPFDVVEDSRGAVAFRIEDESGNVGLYSVEELLGMILGFAGDLAEFHSKVVVKDTVVSVPAYFGQAERRALVQAAQLAGINVLALINE HSGAALQYGIDKDFSNGSRYVVFYDMGASSTYAALVYFSAYNAKEFGKTVSVNQFQVKDVRWDPELGGRSMESRLVEFFADEFNKQVGSGIDVRKSPKAM AKLKKQVKRTKEILSANTMAPISVESLYDDRDFRSSITREKFEELCGDLWDRSLVPIKEVLKHSGLKVDEIYAVELIGGATRVPKLQAKLQEFLGKNELD KHLDADEAIVLGSSLHAANLSDGIKLNRKLGMVDGSSYGLVVELDGSDLQKDESTRQLLVPRMKKLPSKMFRSIIHKKDFEVSLAYESDLLPPSVTSPIF AQYAVSGLTDASEKYSSRNLSSPIKANLHFSLSKSGILSLDRADAVIEISEWVEVPKKNLTVENTTTTSPNITLESDTKNTTEESDVNLNSDGVTDNSSN NNVEGPSTTEPVTEKKLKKRTFRVPLKIVEKTVGPGMPPSKEYLAEAKRKLEELNKKDAERRRTAELKNNLEGYIYSTKEKLETSEEFEKISTADERKSF IEKLDEVQEWLYTDGEDATAKEFEERLDSLKAIGDPIFFRYKELSARPKSIELARKYPGELQQIVKGWETKKPWLPKDRVDEVVGDADKLKSWLDKKEAE QKKASGFSTPVFTSEEVYLKVFSLQEKVASVNRIPKPKPKKNESETSSDKTSSADSTSGETPEKEKQTTDSNGSADEKINPDGSTVEDVNPEPEARDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16660			heat shock protein 70 (Hsp 70)...		Potri.006G022100 [exp]	0	1
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Potri.013G101601 [exp]	1.00	0.8814
					Potri.001G400401 [exp]	1.41	0.8787
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.005G241100 [exp]	4.24	0.8755
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.016G139100 [exp]	5.65	0.8460
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Potri.016G088600 [exp]	7.07	0.8444
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.015G109200 [exp]	7.34	0.8377	CNX1.1
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.003G143600 [exp]	8.94	0.7972	BIP.1
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Potri.002G198000 [exp]	9.38	0.7876
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Potri.001G087500 [exp]	11.53	0.8148	Pt-BIP.2
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.012G111100 [exp]	11.83	0.7882	CNX1.2

Compare expression of checked genes

Potri.006G022100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.