Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 513 / 7e-180 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 511 / 3e-179 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 499 / 1e-174 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 499 / 3e-174 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 495 / 4e-173 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 472 / 9e-164 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G46670 235 / 5e-72 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT3G46660 235 / 6e-72 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT3G11340 232 / 8e-71 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT5G59590 230 / 3e-70 UGT76E2 UDP-glucosyl transferase 76E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G022600 [exp] 907 / 0 AT1G22400 515 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G022300 [exp] 887 / 0 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023101 [exp] 885 / 0 AT1G22360 516 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021800 [exp] 748 / 0 AT1G22400 525 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021300 [exp] 744 / 0 AT1G22400 522 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G023151 [exp] 743 / 0 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021000 [exp] 741 / 0 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021700 [exp] 736 / 0 AT1G22400 524 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021200 [exp] 735 / 0 AT1G22400 523 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007421 [exp] 547 / 0 AT1G22400 529 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10019364 [exp] 543 / 0 AT1G22400 523 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032220 [exp] 534 / 0 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 532 / 0 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 529 / 0 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10010665 [exp] 520 / 0 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032218 [exp] 514 / 2e-180 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10017542 [exp] 504 / 3e-176 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024584 [exp] 502 / 1e-175 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10041055 [exp] 501 / 9e-175 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.006G022500.1 pacid=42768060 polypeptide=Potri.006G022500.1.p locus=Potri.006G022500 ID=Potri.006G022500.1.v4.1 annot-version=v4.1 ATGTTTCGCAAAATCTTAGCTGACAAGCCTCATGTAATCTGTATTCCCTGTCCAGCTCAAAGCCATGTAAAGGCAATGCTTAAACTAGCAAAACTACTGC ATTACCGAGGTTTTCGCATAACCTTTGTGAACACAGAGTTCAACCACAGACGCATGCTTAAATCTAGAGGTCCTTATTCCCTGAATGGCTTGCCCGACTT TCGGTTCGAATCTATCCCAGATGGCCTCCCTCCTTCAGATGAGAATGCTACCCAAGATACACAAGCAATTTTGGAGGCTTGCAAGAAGAACTTGCTAGCT CCATTTAATGAATTGCTTGCCAAGCTCAATGATACAGCATCTGCTGCTGTTCCTCAAGTGACTTGCATTGTATCTGATGGATTTGTGCCAGCTGCCATCA CTGCTGCTGAGAGGCATGGAATTCCTGTTGCCTTGTTCTTTTCTATCTCTGCTTGCACTTTCATGGGGCTTAAGCAATATAAAGAGCTCAAAGAAAGAGG ACTGTTTCCATTAAAAGACGAGAGCTTTTTAACAAATGGCTATTTGGATCAAGTACTAGACTGGATTCCAGGAATGAAAGATATACGGTTAAGGGATCTT CCAAGTTTTCTTCGTACAACAGATCCAGATGATTACCATTTCAACTTCTTCATGGAATGTGCTGAGAGAGCATCTGAAGGTTCTGCAGTGATTTTCCATA CTTTTGATGCTTTGGAGAAAGAAGTCTTGAGTGCTCTTTACTCAATGTTTCCTCGTGTCTACACGATCGGTCCACTTCAATTACTTCTCAATCAAATGAA AGAAGATGATCTAGATTCTATTGGATATAATCTATGGAAAGAAGAGGTTGAGTGTCTCCAATGGCTTGATTCCAAGAAACCAAACTCAGTAATTTATGTG AACTTTGGTAGCGTAGCGGTCGCTACAAAGCAGCAGCTGATTGAATTGGGAATGGGACTTGCTAAAAGTGGCCACCCATTTTTATGGATAATAAGGCCTG ACATGGTCACAGGCGACTCCGCCATATTGCCACCGGAATTTACTGACGAGACTAAAGACAGAGGATTTATTTCTAACTGGTGTCCACAAGAGGAAGTTCT CAACCACCCATCAATAGGAGGTTTCCTAACACATAGTGGATGGAATTCAACAGCTGAGAGCATTTCTTCTGGGGTGCCCATGCTTTGTTTGCCGTTCTTT GGTGATCAACAAACAAACTGTAGGTACACTTGCAATGAGTGGGGCGTTGGAATGGAGATTGATAGCAGTGCGGAAAGAGATAAAGTGGAGAAGCTTGTGC GAGAGTTGATGGAAGGAGAGAAAGGCAGGGAGGTAAAGAAAAAAGTCATGCAGTGGAAAATATTAGCAGAGGAAGCCGCTGGTCCAAGTGGCTCATCATC CATGAATTTAGACGAGTTGGTGAAGGGAGTGCTTTTGAAGTTAGAATGA
AA sequence Show only first row Show all	>Potri.006G022500.1 pacid=42768060 polypeptide=Potri.006G022500.1.p locus=Potri.006G022500 ID=Potri.006G022500.1.v4.1 annot-version=v4.1 MFRKILADKPHVICIPCPAQSHVKAMLKLAKLLHYRGFRITFVNTEFNHRRMLKSRGPYSLNGLPDFRFESIPDGLPPSDENATQDTQAILEACKKNLLA PFNELLAKLNDTASAAVPQVTCIVSDGFVPAAITAAERHGIPVALFFSISACTFMGLKQYKELKERGLFPLKDESFLTNGYLDQVLDWIPGMKDIRLRDL PSFLRTTDPDDYHFNFFMECAERASEGSAVIFHTFDALEKEVLSALYSMFPRVYTIGPLQLLLNQMKEDDLDSIGYNLWKEEVECLQWLDSKKPNSVIYV NFGSVAVATKQQLIELGMGLAKSGHPFLWIIRPDMVTGDSAILPPEFTDETKDRGFISNWCPQEEVLNHPSIGGFLTHSGWNSTAESISSGVPMLCLPFF GDQQTNCRYTCNEWGVGMEIDSSAERDKVEKLVRELMEGEKGREVKKKVMQWKILAEEAAGPSGSSSMNLDELVKGVLLKLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022500 [exp]	0	1
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Potri.002G121200 [exp]	2.44	0.9600	Pt-IFS1.43
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039400 [exp]	4.47	0.9560
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.015G040700 [exp]	4.58	0.9478
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.003G003400 [exp]	5.29	0.9475
AT4G27680			P-loop containing nucleoside t...		Potri.011G055212 [exp]	6.32	0.9362
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039300 [exp]	6.70	0.9452
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.012G102200 [exp]	6.92	0.9319
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.010G236100 [exp]	8.36	0.9441
AT1G02305			Cysteine proteinases superfami...		Potri.002G184201 [exp]	8.94	0.9380
AT1G02260			Divalent ion symporter (.1)		Potri.017G141800 [exp]	11.61	0.9375

Compare expression of checked genes

Potri.006G022500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.