Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 470 / 1e-163 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 467 / 1e-162 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 456 / 5e-158 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 449 / 2e-155 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 446 / 3e-154 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 436 / 4e-150 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G46680 206 / 3e-61 UDP-Glycosyltransferase superfamily protein (.1) AT3G11340 202 / 6e-60 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G46690 198 / 2e-58 UDP-Glycosyltransferase superfamily protein (.1) AT5G59590 198 / 2e-58 UGT76E2 UDP-glucosyl transferase 76E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G023151 [exp] 817 / 0 AT1G22400 521 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021300 [exp] 707 / 0 AT1G22400 522 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021800 [exp] 703 / 0 AT1G22400 525 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021700 [exp] 701 / 0 AT1G22400 524 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G020900 [exp] 700 / 0 AT1G22380 538 / 0.0 UDP-glucosyl transferase 85A3 (.1) Potri.016G021000 [exp] 699 / 0 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021200 [exp] 699 / 0 AT1G22400 523 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G023101 [exp] 689 / 0 AT1G22360 516 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021100 [exp] 688 / 0 AT1G22360 505 / 5e-177 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007421 [exp] 504 / 5e-177 AT1G22400 529 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10019364 [exp] 498 / 1e-174 AT1G22400 523 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032218 [exp] 469 / 4e-163 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 469 / 5e-163 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10010665 [exp] 466 / 6e-162 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032220 [exp] 465 / 2e-161 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10017542 [exp] 464 / 5e-161 AT1G22400 499 / 4e-174 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024583 [exp] 459 / 3e-159 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10041055 [exp] 459 / 3e-159 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10000993 [exp] 456 / 4e-158 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.006G022800.2 pacid=42767243 polypeptide=Potri.006G022850.1.p locus=Potri.006G022800 ID=Potri.006G022800.2.v4.1 annot-version=v4.1 ATGATTTTTAATATTTTAGCTGACAAGCCTCATGCAGTTTGCATTCCCAGCCCAGCTCAGAGCCACATTAAGTCAATGCTTAAGCTATCAAAATTACTAC ATTACAAAGGTTTTCACATAACCTTTGTCAACACAGAGTTTAATCATAAACGTTTGCTTAAATCTAGAGGTCCTGATGCCATGAATGGCTTGCCCGATTT TCGGTTTGAATCCATTCCAGATGGCCTCCCTCCTTCAAATGAGAATGAAACCCAAGATGTCGCTGCACTTTGTGAGGCTGCCAAGAAGAACTTATTAGCT CCGTTTAATGACCTGCTTGACAAGCTTAATGATTCAGCATCTTCTAATGTGCCCCCAGTGACTTGCATCGTCTCTGATGCACTCCGAGAAAAAGGTCTTA CACCACTGAAAGATGAGAGCTTTTTAACTATTGGCTACTTGGACAAAGTTGTAGATTGGATCCCAGGAATGAGAGATATAAGGCTAAGAGACCTTCCAAG TTTTGTTCGTACAACAGATCCAAATGATTTTATGTTTAAAAACTGCTTGGAATGTACTGGGCGGGCTTCTGAAGGTTCTGCAGTTATTTTCCATACTTTT GATGTTTTGGAGCAAGAAGTTCTGAATGCCCTTTACTCTATGTTTCCTCGAGTCTATACAATCGGTCCACTTCAATTGCTTCTCAATCAAATACAAGAAG TATATCTAAGTTCTATTGGATGCAATCTTTGGAAAGAAGAAGTTGAGTGTCTCCAATGGCTTGATTCCAACAAACCCAAGTCAGTGATATATGTGAATTT TGGTAGCATAACACCCGTTAGGAAGGAACAGCTCGTTGGATTTGGCATGGGACTTGCTAAAAGTGGCCATCCATTTTTATGGATAATAAGGCCTGATATG GTCACTGGCGACTCCGCGATATTGCCTCCAGAATTCACTGAAGAAACCAAGGAAAGAAGCTTTATTTGTAGTTGGTGTCCGCAAGAGGAAGTCCCCAACC ACCCATCAATAGGAGGTTTCCTAACACATAGTGGATGGGGTTCAACAATTGAGAGCATTTCTTCTGGTGTGCCTATGCTTTGTTGGCCATTCTTTGGTGA TCAGCAAACAAACTGTAGGTACACATGCTCTGAGTGGGGAATTGGAATGGCGATTGATAACAATGTCAAAAGAGATAAAGTGGAGAAGCTTGTGAGAGAG TTGATGGAGGGAGAGAAAGGTAAGAGCATGAAGAAGAAAGCCATGGAGTGGAAAAAACTAGCAGAGGAGGCCAATGGTCCAAGTGGTTCATCGTCTATGA ATTTAGACAAATTGGTGAAGGAAGTGCTTTTGTCGTGA
AA sequence Show only first row Show all	>Potri.006G022800.2 pacid=42767243 polypeptide=Potri.006G022850.1.p locus=Potri.006G022800 ID=Potri.006G022800.2.v4.1 annot-version=v4.1 MIFNILADKPHAVCIPSPAQSHIKSMLKLSKLLHYKGFHITFVNTEFNHKRLLKSRGPDAMNGLPDFRFESIPDGLPPSNENETQDVAALCEAAKKNLLA PFNDLLDKLNDSASSNVPPVTCIVSDALREKGLTPLKDESFLTIGYLDKVVDWIPGMRDIRLRDLPSFVRTTDPNDFMFKNCLECTGRASEGSAVIFHTF DVLEQEVLNALYSMFPRVYTIGPLQLLLNQIQEVYLSSIGCNLWKEEVECLQWLDSNKPKSVIYVNFGSITPVRKEQLVGFGMGLAKSGHPFLWIIRPDM VTGDSAILPPEFTEETKERSFICSWCPQEEVPNHPSIGGFLTHSGWGSTIESISSGVPMLCWPFFGDQQTNCRYTCSEWGIGMAIDNNVKRDKVEKLVRE LMEGEKGKSMKKKAMEWKKLAEEANGPSGSSSMNLDKLVKEVLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022800 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G023151 [exp]	1.00	0.9841
					Potri.016G124300 [exp]	2.82	0.8183
					Potri.012G022650 [exp]	4.47	0.8319
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G468900 [exp]	7.74	0.8314
					Potri.003G088100 [exp]	10.00	0.7692
AT2G27310			F-box family protein (.1)		Potri.004G199300 [exp]	11.74	0.8314
					Potri.010G070301 [exp]	13.22	0.8272
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.010G101800 [exp]	15.81	0.8116	Pt-ANN5.1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.003G108200 [exp]	22.97	0.7585
					Potri.005G121975 [exp]	24.73	0.6773

Compare expression of checked genes

Potri.006G022800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.