Plant FIBer expression Database

Potri.006G023301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G30135 73 / 1e-17 ZIM TIFY5A, JAZ8 jasmonate-zim-domain protein 8 (.1)
AT2G34600 67 / 7e-15 ZIM TIFY5B, JAZ7 jasmonate-zim-domain protein 7 (.1)
AT3G22275 63 / 1e-13 unknown protein
AT5G13220 48 / 1e-07 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
AT1G19180 43 / 1e-05 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G083900
[exp]
86 / 1e-22 AT1G30135 69 / 1e-15 jasmonate-zim-domain protein 8 (.1)
Potri.003G165000
[exp]
51 / 1e-08 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
Potri.001G062500
[exp]
50 / 3e-08 AT5G13220 170 / 8e-54 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
Potri.001G166200
[exp]
40 / 0.0001 AT1G19180 112 / 1e-29 jasmonate-zim-domain protein 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023303
[exp]
64 / 6e-14 AT1G30135 59 / 1e-11 jasmonate-zim-domain protein 8 (.1)
Lus10038506
[exp]
62 / 4e-13 AT1G30135 57 / 4e-11 jasmonate-zim-domain protein 8 (.1)
Lus10001803
[exp]
44 / 7e-06 AT5G13220 100 / 1e-26 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
Lus10002576
[exp]
40 / 0.0001 AT5G13220 112 / 2e-31 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06200 tify tify domain
CL0281 CCT PF09425 Jas_motif Jas motif
Representative CDS sequence
>Potri.006G023301.1 pacid=42770001 polypeptide=Potri.006G023301.1.p locus=Potri.006G023301 ID=Potri.006G023301.1.v4.1 annot-version=v4.1
ATGAGGAGGGATAGCAACTTGGATCTTTGCCTTTCTCCAATGGCGCCTTCTTCATCTTTGCCGTCGGCTAGTTCCCATCAAAACTTAATGGATGAGCCGG
CAATGCGCCAACAACATCTCACAATCTTCTACAATGGAAGGATTAGTGTTTGTGATGTGACTGAATTTCAGGCTAGAGCAATAATATGGCTAGCAAGTCG
AGAAAAGGAAGAGAGAAGTAACACTACAAGATCCAACCAAGCACCGAAACCTCTGCATTCTCAGCTCCATAGCCCTCCTGGTCTTTCATTGAAGAGATCT
CTCCAAAGGTTCTTGCAAAAGAGAAAGAAGAGGGCCGAAGCGATCTCCCCATATAGACAATGA
AA sequence
>Potri.006G023301.1 pacid=42770001 polypeptide=Potri.006G023301.1.p locus=Potri.006G023301 ID=Potri.006G023301.1.v4.1 annot-version=v4.1
MRRDSNLDLCLSPMAPSSSLPSASSHQNLMDEPAMRQQHLTIFYNGRISVCDVTEFQARAIIWLASREKEERSNTTRSNQAPKPLHSQLHSPPGLSLKRS
LQRFLQKRKKRAEAISPYRQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G30135 ZIM TIFY5A, JAZ8 jasmonate-zim-domain protein 8... Potri.006G023301
[exp]
0 1
Potri.007G014501
[exp]
5.09 0.9939
AT3G07820 Pectin lyase-like superfamily ... Potri.019G067133
[exp]
7.21 0.9939
Potri.017G120650
[exp]
11.40 0.9939
AT3G07820 Pectin lyase-like superfamily ... Potri.019G067100
[exp]
12.48 0.9939
AT1G68620 alpha/beta-Hydrolases superfam... Potri.008G118400
[exp]
17.23 0.9937
AT5G05600 2-oxoglutarate (2OG) and Fe(II... Potri.006G101200
[exp]
18.73 0.9935
AT5G52400 CYP715A1 "cytochrome P450, family 715, ... Potri.015G145100
[exp]
19.44 0.9931
AT3G26040 HXXXD-type acyl-transferase fa... Potri.008G033500
[exp]
19.74 0.9931
AT5G05600 2-oxoglutarate (2OG) and Fe(II... Potri.006G101100
[exp]
20.39 0.9931
AT3G11840 PUB24 plant U-box 24 (.1) Potri.009G016100
[exp]
21.81 0.9930

Potri.006G023301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.