Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32170 648 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G32160 568 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G021900 [exp] 838 / 0 AT2G32170 616 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.016G021400 [exp] 741 / 0 AT2G32170 553 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031038 [exp] 559 / 0 AT2G32170 529 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10035424 [exp] 510 / 0 AT2G32170 485 / 4e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF07942 [poplar] [flax] N2227 N2227-like protein
Representative CDS sequence Show only first row Show all	>Potri.006G023400.1 pacid=42769922 polypeptide=Potri.006G023400.1.p locus=Potri.006G023400 ID=Potri.006G023400.1.v4.1 annot-version=v4.1 ATGATGAAGCCTCCTCAAGGAGAAGAAGAAGATGAAGAACGACTTCGTCAAAGAAAACTTGAAGAAGCCCTTGAAGTCAAGTCTCTCCGGCGCATAATCA GTGCTTACCTCAATTATCCAGAGGCAGCAGAAGAGGATGTTAAAAGATATGAAAGATCTTTTAGGAAGCTTTCTTCTTCTCACAAAGCTTTGTTGTCACA CTACCCTTTGAAGTTTCAAAGTCTAAGAAGGTGTATTTCTATAAATTCGTTTTTCATAATTAATATGCTTCAGGCATTTGAGCCACCCCTAGATATGAGC CACGATGTCGACGATTGTGGGTGCTCGCACTTTGAACAGCCTCCAAATGACATGAATGTTTGCTCTCATGAGTCTGCCGCAGCTAGTGGAAGTTGTTGTT CCAAACCTGATGAAGCTTGTTGTGGAGAACCAAGCAATATGATGAGCAAACCAGCAGATTGTTTGGCTCCCAATGAGGAGGTGGACACTGAAGGTTGTCT TCGGTCTGATACTGGGAGCTGTCTGGCAGGCCGGGAAAATTACAAAATGACATCTGAATGCTGTAGCAATCATGTTTCTGATTCCAATGGAAATGTTCCG TCATCACATCATGATTGGTTAGATCCATCACTTCAGTTGCGTGTTCCGATGGTTGATGTTGATAAGGTCCGTTGTATAATAAGAAACATAGTAAGAGACT GGGCAGCAGAGGGACAGAAAGAACGTGATCAGTGCTACAAGCCTATTCTCGAAGAGCTGAATTCTTTATTCCCTGATCGTTCCAATGAGAGTCCTCCTAC TTGTTTAGTTCCTGGTGCTGGTCTCGGACGTCTGGCCTTGGAGATTTCATGTCTGGGTTTTGTTAGCCAGGGAAATGAATTTTCATACTACATGATGATA TGCTCAAGTTTTATTCTTAACCAGACCGAGACTGCAGGAGAGTGGACTATATATCCTTGGATCCATAGCAATTGCAATTCACTTTCAGATAGTGACCAAC TCCGTCCTGTTTCAATACCAGATATTCATCCAGCAAGTGCAGGGATTACTGAAGGTTTCTCCATGTGTGGCGGTGACTTTGTTGAAGTGTATAGTGATCC AAGTCAAGTAGGAGTTTGGGATGCAGTTGTTACTTGTTTTTTTATTGATACAGCACACAATATTGTTGAATATATTGAAATCATATCAAGGATTTTGAAA GATGGGGGGGTTTGGATAAATCTGGGACCGCTACTATATCATTTTGCTGATGTGTACGGACAAGAAGATGAGATGTCCATTGAACTGAGTTTGGAAGATG TAAAAAGAGTTGCGTTAAATTATGGGTTTGAAGTTGAGAAGGAATCGACAATTGAAACGACTTACACTACAAATCCTCGAGCAATGATGCAAAATCGATA CTTCCCTGCATTCTGGACAATGAGAAAGAAATCGGTGGAGAAGCATTCTACATGA
AA sequence Show only first row Show all	>Potri.006G023400.1 pacid=42769922 polypeptide=Potri.006G023400.1.p locus=Potri.006G023400 ID=Potri.006G023400.1.v4.1 annot-version=v4.1 MMKPPQGEEEDEERLRQRKLEEALEVKSLRRIISAYLNYPEAAEEDVKRYERSFRKLSSSHKALLSHYPLKFQSLRRCISINSFFIINMLQAFEPPLDMS HDVDDCGCSHFEQPPNDMNVCSHESAAASGSCCSKPDEACCGEPSNMMSKPADCLAPNEEVDTEGCLRSDTGSCLAGRENYKMTSECCSNHVSDSNGNVP SSHHDWLDPSLQLRVPMVDVDKVRCIIRNIVRDWAAEGQKERDQCYKPILEELNSLFPDRSNESPPTCLVPGAGLGRLALEISCLGFVSQGNEFSYYMMI CSSFILNQTETAGEWTIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGVWDAVVTCFFIDTAHNIVEYIEIISRILK DGGVWINLGPLLYHFADVYGQEDEMSIELSLEDVKRVALNYGFEVEKESTIETTYTTNPRAMMQNRYFPAFWTMRKKSVEKHST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.006G023400 [exp]	0	1
AT2G18850			SET domain-containing protein ...		Potri.006G168900 [exp]	1.41	0.7565
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.008G013300 [exp]	9.59	0.6337
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Potri.005G235900 [exp]	10.67	0.6317
AT3G28700			Protein of unknown function (D...		Potri.017G077000 [exp]	13.41	0.5671
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.017G097200 [exp]	20.34	0.5252
AT1G20823			RING/U-box superfamily protein...		Potri.005G099000 [exp]	21.67	0.5819
AT1G21690		RFC4, EMB1968	replication factor C 4, embryo...		Potri.005G181300 [exp]	23.45	0.6016
AT4G10360			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.019G133500 [exp]	29.52	0.5903
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.017G139000 [exp]	36.75	0.5973
AT5G44450			methyltransferases (.1)		Potri.011G157500 [exp]	45.36	0.5656

Compare expression of checked genes

Potri.006G023400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.