Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14970 1451 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14631 [poplar] [flax] FancD2 Fanconi anaemia protein FancD2 nuclease
Representative CDS sequence Show only first row Show all	>Potri.006G023500.1 pacid=42768755 polypeptide=Potri.006G023500.1.p locus=Potri.006G023500 ID=Potri.006G023500.1.v4.1 annot-version=v4.1 ATGGTGTTCCTCCACCAACAAAACCCCTCCCGGAAACGACCTTCCTCCTTTATTCCTCCATTTCCACAACCGAAAATCCCCAAATCCTCCACGACCACCA CCAAAAAACCACCACAATCTCAAAACGAAGCCGTCGAGGACAATCAAGTATCATCATCCTCATCGTCATCATCCGTTGATAAATTGGTGTCGATTCTAGC TGATGCTGGCTGTACTTTGATCAATCCTTCAGGTCCACCTTGCCTTCCTTCTGATCATCATAAGTTCCGGAACCATCTCAACCGTCTATTTTCTTCTTCC GATACCGCCCCTGCTCTCCGCTCCGATTTCCTTTCCGGATTCTCCTCTTACATTAATCTTCAACATAACTTCCGCAGGGTTCTTGCATTTTCGAAACGAG ATGGTTTTGGCGCCAAGAGAAGTGAGAGCTTAGTAAGGCAGCTCTTGCTAGTTCCAGCAATTCAGCTAGACCTTCAGATCATGCTCCTCGAGAAACTTCC GGAATATTTCGACACGAATTCCGTAGATTCTAGAACAACACTGTCGCTCGAAGATGATGTAGCCAGGCTGATAATTGATCAATTCCGGTGGCTTGATTTT GTTGTTGATCCTAATACATTCACGGATAAGTTATTGCAAGTTGTTTCAATCTGTCCTTTATATTTAAAGAAAGAGATTATCGGTTCTTTGCCGGAGATCA TCGGTGATCAAAGTAGTAATAATGCTGTCGTTGATTCGTTAGACCAAATGCTACAGGAGGATTCTGAGATCATTGTGCCGGTGCTTGATGCGTTTTCGAA TCTTAATCTGGATGAAATGATGCAAGAACAGGTTATTTCGACAGCTTTATCGTGTATTAGGACAATAGATGGGGAGCATATTCCGAATTTGCTTAGTTTT TTATTGCTATCGGCTACACCTCAAAATGTTCGAAGAATAATATCGCAGATTCGTCAGCAGCTAAAATTTGTGGGAATGTCGAATAGTTCTCGTTCAAGTC AGCAGCGGAAACTTAAAGGGAAGTCACTCGTGGATAATACGGAGGCGTCTATTCTTGATGCTTTGAGATCAAGTCTTTTATTTAAGAATATGCTGTGTCA GGAGGTTTTGAAAGAATTGAGTAGTATTGAGAAACCTCAGGATCACAAGGTCATAGACATATGGCTTCTGATATTGATATACATGAATGGCAAGTCGATG CAAAAGAGTGTTGAGAAGATTCTCAAGAAGAAAATTGTTGAAAGTTGTATTCGGGAAGATATGATTGACCAGTGTATTTGTGGCAACAAAGAACTGGTTC AGGATTATTTTCCGTGGTTTCTTTCATTGGCCGAGCACTTATTGGCATGTAAAGAACAAAAAGCAAGGGATTTTGGCATTCACATATACATTTGCTTGTT TGGAGAGTTTGGTGATACTTATTTTCGACAAGAGGTTCTTGGGGCACTTGTGACTCATGTTGGATCTGGTGTTAGTTTCGAAGTAAATTCTTCTTTGAAC ACCATGGCTTTGCTGGCCTCCAAGTATCCACAGGAGTTGATTCCACTTTCTGCTCATATAAATGGTATACTGGATTACTTGGAAGGATTTTGCATGGAAC ATCTACACAAGGTTTATGAAGTTTTCAGCAAGCTGGCTTTGGCAGCTCGATCTAGTACATATTGTTTTGGATCTTCAATTGCAGATGAACTGTTTATGAT AATCCGAAAGCAGGTCAGCCATCCAGATATGAAGTACAAGAAGATGGGCCTAATCGGGACTCTGAAAGTAGTCTCTTGTCTCGGAGACATAAATAATGCT ACCGGGGCGTCTCCTTCTCAGAAATCTAACTGTGAGGAGGCTTTGGAACTCTTGAGAACATCTCTGGATTCTTGCAAGCAGTTGTGCTTACCATTGGTTC TCTTTTATGATGAACTGACTACAATAATGCTTCATAAGAAACTTCAGCCAGAAATTGTAGAATGGGTTGGCAAACATGCTGGAGAGTTTGAGTCTAAGTT TCTATCTGATCTCCAAGGTGGACAATTACCAGGCGAGGACTCATATTGTGGTTTAGAAGGGGAACTGTGGATGAACCTGGATGGTGACATATCTCCTATT TGTTTGAGCATTTTGTCATTGTCGTCCTCTTCCTTGCAGTCTACGTCTTCATTGCAAGTTCTTCCTGCTAACTTCCTCTTACTATCCGCTGTTGAGAGGT TGACAAATCAGGGATCTCTTAGTGGAATTGATGCACTACTTGGCTGCCCTTTGCACCTTCCCTCCTCTAAGTACTTTTCTGAAGCAGGCTGGCAATCATT GACAGCTAAGCAGAAACAGATTGTATGCCTTTCTCTTTATTATGCGGCAAACTGGATAAGGGAACTGCTTAATGCCTTTTGTACACAAGTTACTGGAAGA TTTGAATGCACCAGTCAGGCTACAAAAATGGATATAATTGTCAAGCTATTGAAGCGACTCAGGAACCTAGTATTTCTGGAAAATTTACTAAACAACTGCA TCAAATGCCATCCTCTGTCTCTGCCAGAGCTCCATCTTCAAGTTGATAATTCTGGAACTTTACTTTTAAACAAAGCTAACAATAGGGTACATTTCGAAAA AAACGGTGAACATAAGAAAACACAAGACAACAAACATAAAAAGACATCAAAAGAATCAAGTTCGGATCCAAATGGTAAACTCCGGCAGCCAACAATATTG GATGTGTTGAGGAAAAAAGGAGCTGTAACAAGCCAAGATGTCTCAAATGAGGAGTCTACTAGTCAATCTTCGAAGGGACAAACATTTATTCCTGCAGATC AAGATTCCTGTAATTCTACTGGGCTAATAAGTTTAGAAGTTTCTGCAGTTGCCAAGGCTCTAGAAGCACAACGATTTAAATTCAGGCCGCTCCATGTCCA ATGTTACTCCCTTTTGATGTTTTCAAATAATCAAAAGTCCTGTTGCCTTGATCCTGCAGTTGAGTTACCCCTCTATCTATACCTTTTGCGCGATCTTCAC AACAAGCTGGATTACTTTATGCCTCCTGGAAAACAATTCTCGGCCACATGCTTGAGTGCTCCTGCAGGTTTTACTAGAATGACCTTGCAAGAGTTCTTGA GCAACGTTAGGCCGCTTTTTCCAAATCTGAGAAGGCATTTTGATAATGCCATTTTTGTTCTTAAAGAAGGTGATGGAACTTGTGAAGATCATTGGAATGT TCACTCTGCTTCTGCTGGAAATCCAGAAGTAGCCAGTATTGTGTTTTCAAAATCTGTAGTTTCGACTTTGGTATTTAAAGAAGTACTTCATAGTTTTAGT AAGATGCTAAACCTTATTGATGTTCAAATGCACAAATCAGTTCTATCGGATCTTCTTGAAGCCTTTCAACCAAGAGAAGTATCCGAGAATGTGTTTTCTG GCCTACAGCATAGCCCTTCACCTGGGACAATAGAATATTTGTATCTTGGAGCTTCATCATTTATTGAAGATGCATTAGATATGGCATGTTCATTCTCCTT TATGCTGGCCTCAGAATCTCTTCTTACCCTAGAATCACTTGTAACCTCTGTCCAGACTGTACTGGATAAATCGGAGACTAATGGTAAAGGTATACACTCA CCATCCATTCACAGGATCCTTCCAAACTTGCGCAGCAGACTTGGAACTTCTGCCCAGAAGCTTTTAAGTCACAACTGGGATAGTGAACATCTTGAGAACA GTTGGAAGAACAAAGGGGAAATTGTACAAAAGATTTTGCAGATTTACCTGGAGAATAGTGAATCTAAATCTGATTTGTTGGATAAGCTTGCCTGCTCTAT TTTGCCTGTGGTTTCTTCATCTGGAACAACAGTAGAAGATGATCATCATGGTTTCCCAACTCTATGCAATGCAACATTTGTTGTGTGGTGCCGGGTGCTG CATGAAGGGAACATCGCTATTCTTAACAAATTGGTTAAGGAAATTGCTCTCTTTATGAAACCCAGAGCTGCTGTTCAGATTGAAGCTGTTGAAAAGCATT TGATCAAAATACAAAAATCTGTGAACGTTGTCGTATCACTAGTTAACTTGTGCAGAACTCATGACAAGGTGACTGTGCGTGCCATGTCTGTCAAGTATGG TGGGAAGTTTGTGGACTCCTTCCTAAAAGTTTTTGATTTCTTACAGGCTCACTTTCAAACACACAATGAACTCATAATCCAATTGGTAACAGAGCTTCAA AAGGCCACAAGAACAATACAGACTCTATGTTCTGAAGCAAAGGGCTCGAAACAAACAGCCATCACTAGCAAAATTCCTGCTACAAAGCGTTCAATGGAAC GGTTTTTGTTCCGCGTCAAGGCTCTTCTTCACTCGACATCAAGTGGATGCACTTTTTGGATGGGGAATTTGAAACATAAAGATTTGACGGGTCAGGTTGT AAGTTCCCAGGCCTATGCAGATGATCAGAACAATAATGTTGACGAAGATCTGGCAGAAGCTGTTGAGGAGGATCAGCCAGTTAGTGTTGCTAGTGAGGAT AGAGAAACAGAATAA
AA sequence Show only first row Show all	>Potri.006G023500.1 pacid=42768755 polypeptide=Potri.006G023500.1.p locus=Potri.006G023500 ID=Potri.006G023500.1.v4.1 annot-version=v4.1 MVFLHQQNPSRKRPSSFIPPFPQPKIPKSSTTTTKKPPQSQNEAVEDNQVSSSSSSSSVDKLVSILADAGCTLINPSGPPCLPSDHHKFRNHLNRLFSSS DTAPALRSDFLSGFSSYINLQHNFRRVLAFSKRDGFGAKRSESLVRQLLLVPAIQLDLQIMLLEKLPEYFDTNSVDSRTTLSLEDDVARLIIDQFRWLDF VVDPNTFTDKLLQVVSICPLYLKKEIIGSLPEIIGDQSSNNAVVDSLDQMLQEDSEIIVPVLDAFSNLNLDEMMQEQVISTALSCIRTIDGEHIPNLLSF LLLSATPQNVRRIISQIRQQLKFVGMSNSSRSSQQRKLKGKSLVDNTEASILDALRSSLLFKNMLCQEVLKELSSIEKPQDHKVIDIWLLILIYMNGKSM QKSVEKILKKKIVESCIREDMIDQCICGNKELVQDYFPWFLSLAEHLLACKEQKARDFGIHIYICLFGEFGDTYFRQEVLGALVTHVGSGVSFEVNSSLN TMALLASKYPQELIPLSAHINGILDYLEGFCMEHLHKVYEVFSKLALAARSSTYCFGSSIADELFMIIRKQVSHPDMKYKKMGLIGTLKVVSCLGDINNA TGASPSQKSNCEEALELLRTSLDSCKQLCLPLVLFYDELTTIMLHKKLQPEIVEWVGKHAGEFESKFLSDLQGGQLPGEDSYCGLEGELWMNLDGDISPI CLSILSLSSSSLQSTSSLQVLPANFLLLSAVERLTNQGSLSGIDALLGCPLHLPSSKYFSEAGWQSLTAKQKQIVCLSLYYAANWIRELLNAFCTQVTGR FECTSQATKMDIIVKLLKRLRNLVFLENLLNNCIKCHPLSLPELHLQVDNSGTLLLNKANNRVHFEKNGEHKKTQDNKHKKTSKESSSDPNGKLRQPTIL DVLRKKGAVTSQDVSNEESTSQSSKGQTFIPADQDSCNSTGLISLEVSAVAKALEAQRFKFRPLHVQCYSLLMFSNNQKSCCLDPAVELPLYLYLLRDLH NKLDYFMPPGKQFSATCLSAPAGFTRMTLQEFLSNVRPLFPNLRRHFDNAIFVLKEGDGTCEDHWNVHSASAGNPEVASIVFSKSVVSTLVFKEVLHSFS KMLNLIDVQMHKSVLSDLLEAFQPREVSENVFSGLQHSPSPGTIEYLYLGASSFIEDALDMACSFSFMLASESLLTLESLVTSVQTVLDKSETNGKGIHS PSIHRILPNLRSRLGTSAQKLLSHNWDSEHLENSWKNKGEIVQKILQIYLENSESKSDLLDKLACSILPVVSSSGTTVEDDHHGFPTLCNATFVVWCRVL HEGNIAILNKLVKEIALFMKPRAAVQIEAVEKHLIKIQKSVNVVVSLVNLCRTHDKVTVRAMSVKYGGKFVDSFLKVFDFLQAHFQTHNELIIQLVTELQ KATRTIQTLCSEAKGSKQTAITSKIPATKRSMERFLFRVKALLHSTSSGCTFWMGNLKHKDLTGQVVSSQAYADDQNNNVDEDLAEAVEEDQPVSVASED RETE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14970			unknown protein		Potri.006G023500 [exp]	0	1
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Potri.007G110800 [exp]	1.00	0.9410
AT3G09080			Transducin/WD40 repeat-like su...		Potri.006G096400 [exp]	2.82	0.9261
AT2G20980		MCM10	minichromosome maintenance 10 ...		Potri.009G134500 [exp]	6.92	0.9210
AT4G16970			Protein kinase superfamily pro...		Potri.001G151900 [exp]	8.00	0.9187
AT2G45490		ATAUR3	ataurora3 (.1)		Potri.006G080500 [exp]	8.36	0.9133
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	11.22	0.9149
AT5G37930			Protein with RING/U-box and TR...		Potri.017G122800 [exp]	12.12	0.8949
AT1G07270			Cell division control, Cdc6 (....		Potri.001G250200 [exp]	12.96	0.9059
AT1G18090			5'-3' exonuclease family prote...		Potri.015G041400 [exp]	13.22	0.9150
AT2G37960			unknown protein		Potri.006G094600 [exp]	14.14	0.9078

Compare expression of checked genes

Potri.006G023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.